View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_42 (Length: 205)
Name: NF11268_low_42
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 39280703 - 39280880
Alignment:
| Q |
10 |
agaagcatagggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagtta |
109 |
Q |
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| T |
39280703 |
agaagcattgggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttctaaggctagagttg |
39280802 |
T |
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| Q |
110 |
attcaacaagtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggcctt |
187 |
Q |
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| T |
39280803 |
attcaacaagcagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggcctt |
39280880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 17349726 - 17349549
Alignment:
| Q |
10 |
agaagcatagggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagtta |
109 |
Q |
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| T |
17349726 |
agaagcgttgggtttgtatcatgacatgttcttggagggtgttattgctaacactataacatacaatacgttaattcacgcatttcttaggggagattcg |
17349627 |
T |
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| Q |
110 |
attcaacaagtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggcctt |
187 |
Q |
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| T |
17349626 |
attcaacaagcgtataagcttgttaatgaaatgctatttcgagggtttccccttgataatattacttataatggcctt |
17349549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 17349492 - 17349324
Alignment:
| Q |
19 |
gggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagttaattcaacaa |
118 |
Q |
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||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||| | ||||| |||||||||||| ||| | ||||||||| |
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| T |
17349492 |
gggtttgtatcatgacatgttcttggagggtgttattgctaacactataacatacaatacgttaattcacgcatttcttaggggagattcgattcaacaa |
17349393 |
T |
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| Q |
119 |
gtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggcctt |
187 |
Q |
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| T |
17349392 |
gcgtataagcttgttaatgaaatgctatttcgagggtttccccttgataatattacttataatggcctt |
17349324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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