View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_9 (Length: 561)
Name: NF11268_low_9
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 88 - 546
Target Start/End: Original strand, 16186284 - 16186742
Alignment:
| Q |
88 |
gactaatgatatttccattcatccatcaagaagaaaacaagttggaaatataagtacgacacgaaactcttataagccaaaggccaaaaataaaagaagt |
187 |
Q |
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| T |
16186284 |
gactaatgatatttccattcatccatcaagaagaaaacaagttggaaatataagtacgacacaaaactcttataagccaaaggccaaaaataaaagaagt |
16186383 |
T |
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| Q |
188 |
aacatcctatataaccacgtgtaacatgaagaattcaacatagaaaattgatagtttttaatgtcaaaaattagaagaaagtacatatacatcatcagtt |
287 |
Q |
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| T |
16186384 |
aacatcctatataaccacgtgtaacatgaagaattcaacatagaaaattgatagtttttaatgtcaaaaattagaagaaagtacatatacatcatcagtt |
16186483 |
T |
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| Q |
288 |
tcatgaacggttaagaaatcatcaaatatgtaccaagactaaatcataaaagattttaaaagcaattataataaaaggttcatcgcactgatacctggaa |
387 |
Q |
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| T |
16186484 |
tcatgaacggttaagaaatcatcaaatatgtaccaagactaaatcataaaagattttaaaagcaattataataaaaggttcatcgcactgatacctggaa |
16186583 |
T |
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| Q |
388 |
ttatcggtgaacaaccaagcaacaaagataaagtgatcaaataaagaaggacgatattataaagtgatcaaagaaattgaagccatcatcgacaaacaac |
487 |
Q |
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| T |
16186584 |
ttatcggtgaacaaccaagcaacaaaggtaaagtgatcaaataaagaaggacgatattataaagtgatcaaagaaactgaagccatcatcgacaaacaac |
16186683 |
T |
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| Q |
488 |
ataactaagaatcaattacgaatttaacacatgaaaataatgaattcaaaaatattaac |
546 |
Q |
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| T |
16186684 |
ataactaagaatcaattacgaatttaacacatgaaaataatgaattcaaaaatattaac |
16186742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 537
Target Start/End: Complemental strand, 171696 - 171657
Alignment:
| Q |
498 |
atcaattacgaatttaacacatgaaaataatgaattcaaa |
537 |
Q |
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| T |
171696 |
atcaactacgaatttagcacatgaaaataatgaattcaaa |
171657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 14645595 - 14645634
Alignment:
| Q |
498 |
atcaattacgaatttaacacatgaaaataatgaattcaaa |
537 |
Q |
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| T |
14645595 |
atcaactacgaatttagcacatgaaaataatgaattcaaa |
14645634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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