View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_10 (Length: 413)
Name: NF11269_high_10
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 31135528 - 31135913
Alignment:
| Q |
12 |
aagaaaccagatgaaaagagttggttggtccaagtagcttgtggagcttttttcatttcaaccatatcaaagcttaaactccaggttttcatgtcattaa |
111 |
Q |
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| T |
31135528 |
aagaaaccagatgaaaagagttggttggtcgaagtagcttgtggagcttttttcatttcaaccatatctgagcttaaactccaggttttcatgtcattaa |
31135627 |
T |
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| Q |
112 |
gtgcccaaagcttctattccgaaaaaataaattctttaattggtattgtgtttcagaaagnnnnnnnnnnn--ctaatgtgtttcttttccctctttcag |
209 |
Q |
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| T |
31135628 |
gtgcccaaagcttttattccgaaaaaataagttctttaattggtattgtgtttcagaaagaagaagaaaaaaactaatgtgtttcttgtccctctttcag |
31135727 |
T |
|
| Q |
210 |
gagagcactcgaattattaaggaaatctttggtaccaattggattaaaaaagaagaaatacaaaacctaatcaaatggttgaatgatgggtgtattacat |
309 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31135728 |
gagagcactcaaattattaaggaaatctttggtaccaattggattaaaaaagaagaaatacaaaacctaatcaaatggttgaatgatgggtgtattgcat |
31135827 |
T |
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| Q |
310 |
tgcaagacaataacaataaaaaacaggtatgacaaactcataannnnnnnattaaaattttctataaatgttattttgatacatatt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31135828 |
tgcaagacaataacaataaaaaacaggtatgacaaactcataatttttttattaaaattttctataaatgtta-tttgatacatatt |
31135913 |
T |
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