View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11269_high_12 (Length: 398)
Name: NF11269_high_12
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 29648067 - 29647690
Alignment:
| Q |
1 |
taatctcttatattaatagttacatatataatttctttataggttccaatgctaaggagcctagagtttatggcatgttactatataactgggagctata |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29648067 |
taatctcttatattaatagttacatg----atttctttataggttccaatgctaaggagcctagagtttatggcatgttactatataactgggagctata |
29647972 |
T |
|
| Q |
101 |
agactcaagactatggatactgcatgagggtaaaacaatatagagatcttttctatgcagtgtcctttcttccatactattggagagcaatgcaggtaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29647971 |
agactcaagactatggatactgcatgagggtaaaacaatatagagatcttttctatgcagtgtcctttcttccatactattggagagcaatgcaggtaaa |
29647872 |
T |
|
| Q |
201 |
aatttgtaaacattttatagttaaacctttctttaagcatattctcaagcnnnnnnncaactatgaaatatgaaaatctaatgacccttaatttgatttc |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
29647871 |
aatttgtaaacattttatagttttacctttctttaagcatattctcaagctttttttcaactatgaaatatgaaaaactaatgtttcttaatttgatttc |
29647772 |
T |
|
| Q |
301 |
tagtgtgcaaggagatggtttgatgaaggggacacaaatcaccttatcaatctaggcaaatatgtttcagctatgttagctg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
29647771 |
tagtgtgcaaggagatggtttgatgaaggggacacaaatcaccttatcaatctagggaaatatgtttctgctatgttagctg |
29647690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University