View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_19 (Length: 321)
Name: NF11269_high_19
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 24459363 - 24459068
Alignment:
| Q |
21 |
tgtattatacgttgatttgcacacattttactaggtaaggtttgtacaattactgtcaatattgtagtcttaactggtttaaactttgaagttattctgc |
120 |
Q |
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| T |
24459363 |
tgtatgatacgttgatttgcacacattttactaggtaaggtttgtacaattactgtcaatattgcagttttaactggtttaaactttgaagttattctgc |
24459264 |
T |
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| Q |
121 |
attgttaatagtttgcaatacctagctatggaatttatgatttcttagttttatcattgaaaagaaaggggnnnnnnnngaaaataattccaggtgattt |
220 |
Q |
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| T |
24459263 |
gttgttaatagtttgcaatacctagctatggaatttatgatttcttagttttatcattgaaaagaaaggggaaaaaaaagaaaataattccaggtgattt |
24459164 |
T |
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| Q |
221 |
aaaacttgaattagaaataaacacggaagttatc---nnnnnnnnnngagggaaacacaaaagttatctttggttatgaactt-agcttttctctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
24459163 |
aaaacttgaattagaaataaacacggaagttatctttttttttttttgagggaaacacaaaagttatctttagttatgaacttaagcttttctctg |
24459068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 24477522 - 24477287
Alignment:
| Q |
19 |
tctgtattatacgttgatttgcacacattttactaggtaaggtttgtacaattactgtcaatattgtagtcttaactggtttaaactttgaagttattct |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
24477522 |
tctgtatgatacgttgatttgcacacattttactaggtaaggtttgtactgttactgtcaatattgcagtcttaattggtttaaactttgaagttattct |
24477423 |
T |
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| Q |
119 |
gcattgttaatagtttgcaatacctagctatggaatttatgatttcttagttttatcattgaaaagaaaggggnnnnnnnngaaaataattccaggtgat |
218 |
Q |
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| T |
24477422 |
gcattgttaatagtttgcaatacctagctctgaaatttatgatttcttagttttatcattgaaaacaaaggggaaaaaaaagaaaataattccagttgat |
24477323 |
T |
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| Q |
219 |
ttaaaacttgaattagaaataaacacggaagttatc |
254 |
Q |
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|||||||||||||||||||| ||||| |||||||| |
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| T |
24477322 |
ttaaaacttgaattagaaatgaacacaaaagttatc |
24477287 |
T |
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