View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_2 (Length: 560)
Name: NF11269_high_2
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 19056598 - 19056055
Alignment:
| Q |
1 |
cgagaatcaagacatggaaggtaaacatagatcgtatgtggttgaacaaattgacaattgtcgtgactatattgtataatatattgatggtgtaaattga |
100 |
Q |
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| T |
19056598 |
cgagaatcaagacatggaaggtaaacatagatcgtatgtggttgaacaaattgacaattatcgtgactatattgtataaaatattgatggtgtaaattga |
19056499 |
T |
|
| Q |
101 |
ttttgtagagttgagttaaatcca--ttcaaaatattctcataataacatatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatc |
198 |
Q |
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| T |
19056498 |
ttttgtagagttgagttaaatccaaattcaaaatattctcataataacatatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatc |
19056399 |
T |
|
| Q |
199 |
acatacgaaaatattaaacttgcagaagtcaagaaccctattattattaatcaaaactacaatcctcatgtatatgatagttctagcgaagtagtgaaag |
298 |
Q |
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| T |
19056398 |
acatacgaaaatattaaacttgtagaagtcaagaaccctattattattaatcaaaactacaatcctcatatatatgatagttctagcgaagtagtgaaag |
19056299 |
T |
|
| Q |
299 |
tgagtgatgttactttcctcaacatacatggaacctccgttaatgagaatacggtccaattaaattgtgaccctaatattgggtgcgacaacattataat |
398 |
Q |
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| T |
19056298 |
tgagtgatgttactttcctcaacatacatggaacctccgttaatgagaatacggtccaattaaattgtgaccctaaaattgggtgcgacaacattataat |
19056199 |
T |
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| Q |
399 |
cgatcatattaacataactagtgttgctggaggggaaccacatgcatcatgcactaatgcacatggaacatgctcttcatcttatccagatgtgtcgtgt |
498 |
Q |
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| T |
19056198 |
cgatcatattaacataactagtgttgctggaggggaaccacatgcatcatgcactaatgcacatgggacatgctcttcatcttatccagatgtgtcgtgt |
19056099 |
T |
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| Q |
499 |
ctttcagataacaattcatagtgctatttcgtacaataatacac |
542 |
Q |
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| T |
19056098 |
ctttcagataacaaatgataatgctatttcgtacaataatacac |
19056055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 21365835 - 21365702
Alignment:
| Q |
175 |
ggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgcagaagtcaagaaccctattattattaatcaaaactacaatcctcatgtatatg |
274 |
Q |
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| T |
21365835 |
ggaagtgggtatgcaaggaatgtcgcatacgaagatattaaacttggatgagtcaagaaccctctgattgttgatcaatattatgatcgtcatg-gtatg |
21365737 |
T |
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| Q |
275 |
atagttctagcgaagtagtgaaagtgagtgatgtt |
309 |
Q |
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| T |
21365736 |
atagtgctagcaaagtattgaaagtgagtgatgtt |
21365702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 38097572 - 38097637
Alignment:
| Q |
147 |
atatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatat |
212 |
Q |
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| T |
38097572 |
atatatgttttgttatttgaattagggaggatctggatatgcgaggaacattacatacgaagatat |
38097637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 21551928 - 21552006
Alignment:
| Q |
159 |
ttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgcagaagtcaagaaccct |
237 |
Q |
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| T |
21551928 |
ttgtttgaattagggtggatctggatatgcaaggaacattaaatacgaagatattacacttgttgaagtcgagaaccct |
21552006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 21552048 - 21552092
Alignment:
| Q |
291 |
agtgaaagtgagtgatgttactttcctcaacatacatggaacctc |
335 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
21552048 |
agtggaagtaagtgatgttactttcagcaacatacatggaacctc |
21552092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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