View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_28 (Length: 251)
Name: NF11269_high_28
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 51405285 - 51405046
Alignment:
| Q |
12 |
atgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacag |
111 |
Q |
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| T |
51405285 |
atgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacaa |
51405186 |
T |
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| Q |
112 |
caaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgag |
211 |
Q |
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| T |
51405185 |
caaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacaag |
51405086 |
T |
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| Q |
212 |
ctcattcattacatgaaatgaatgtcctaatgactccatc |
251 |
Q |
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| T |
51405085 |
ctcattcattacatgaaatgaatgtcctaatgactccatc |
51405046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 29981430 - 29981600
Alignment:
| Q |
29 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
128 |
Q |
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|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| |||| |||| || | ||||| |
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| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
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| Q |
129 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatg |
199 |
Q |
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| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatg |
29981600 |
T |
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