View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11269_high_29 (Length: 250)

Name: NF11269_high_29
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11269_high_29
NF11269_high_29
[»] chr4 (28 HSPs)
chr4 (123-250)||(31537328-31537458)
chr4 (11-122)||(10337104-10337215)
chr4 (14-120)||(48713413-48713519)
chr4 (26-120)||(44251607-44251701)
chr4 (26-120)||(19994500-19994594)
chr4 (26-120)||(19996017-19996111)
chr4 (14-120)||(32082584-32082690)
chr4 (26-120)||(55948916-55949010)
chr4 (14-120)||(42977200-42977306)
chr4 (14-120)||(54123496-54123602)
chr4 (7-120)||(44253136-44253249)
chr4 (14-120)||(42978870-42978976)
chr4 (26-126)||(48711854-48711954)
chr4 (64-120)||(18597855-18597911)
chr4 (26-132)||(53355088-53355196)
chr4 (14-120)||(54121827-54121935)
chr4 (26-120)||(18597634-18597728)
chr4 (26-120)||(55947362-55947456)
chr4 (31-125)||(24919049-24919143)
chr4 (14-119)||(10338119-10338226)
chr4 (31-119)||(22309106-22309194)
chr4 (63-120)||(33609344-33609401)
chr4 (63-120)||(42889810-42889867)
chr4 (65-131)||(28695911-28695977)
chr4 (32-119)||(33607471-33607558)
chr4 (65-119)||(38157023-38157077)
chr4 (70-119)||(54534981-54535030)
chr4 (63-119)||(54536697-54536753)
[»] chr6 (7 HSPs)
chr6 (14-122)||(8752751-8752859)
chr6 (14-120)||(2956186-2956292)
chr6 (14-120)||(8745434-8745540)
chr6 (22-120)||(1258399-1258497)
chr6 (26-120)||(1256716-1256810)
chr6 (26-120)||(19084083-19084177)
chr6 (63-120)||(7678647-7678704)
[»] chr7 (21 HSPs)
chr7 (26-120)||(8230072-8230166)
chr7 (26-120)||(31393622-31393716)
chr7 (26-119)||(40028460-40028553)
chr7 (26-120)||(8231597-8231691)
chr7 (26-120)||(31392060-31392154)
chr7 (26-120)||(45277930-45278024)
chr7 (26-120)||(21716582-21716676)
chr7 (26-120)||(21715074-21715168)
chr7 (11-120)||(15136887-15136996)
chr7 (26-120)||(45276412-45276505)
chr7 (26-120)||(46245124-46245218)
chr7 (26-120)||(40029992-40030086)
chr7 (26-120)||(46246538-46246632)
chr7 (31-120)||(13420254-13420343)
chr7 (26-107)||(4675760-4675840)
chr7 (31-119)||(11671254-11671342)
chr7 (70-105)||(21914645-21914680)
chr7 (31-117)||(12180607-12180693)
chr7 (14-54)||(30792781-30792821)
chr7 (31-120)||(37133617-37133706)
chr7 (29-120)||(32882681-32882771)
[»] chr2 (16 HSPs)
chr2 (14-120)||(28563378-28563484)
chr2 (26-125)||(1841718-1841817)
chr2 (26-120)||(1840159-1840253)
chr2 (26-119)||(13947751-13947843)
chr2 (26-119)||(14088940-14089032)
chr2 (26-120)||(45499307-45499401)
chr2 (26-126)||(40304725-40304825)
chr2 (64-122)||(44465091-44465149)
chr2 (26-120)||(40303295-40303389)
chr2 (63-120)||(44421342-44421399)
chr2 (26-120)||(45492995-45493089)
chr2 (26-120)||(45500737-45500831)
chr2 (32-123)||(7317389-7317480)
chr2 (63-120)||(34591727-34591784)
chr2 (65-120)||(18224847-18224902)
chr2 (22-120)||(38730021-38730120)
[»] chr1 (23 HSPs)
chr1 (26-120)||(7655227-7655321)
chr1 (7-128)||(41668267-41668388)
chr1 (26-120)||(16673219-16673313)
chr1 (26-120)||(19249322-19249416)
chr1 (22-120)||(28920614-28920712)
chr1 (26-120)||(33257883-33257976)
chr1 (26-120)||(33278055-33278148)
chr1 (26-120)||(33259335-33259429)
chr1 (26-120)||(33279494-33279588)
chr1 (26-120)||(36145346-36145440)
chr1 (26-125)||(7653683-7653782)
chr1 (26-120)||(28919085-28919179)
chr1 (63-120)||(16592023-16592080)
chr1 (31-119)||(13211080-13211168)
chr1 (26-110)||(19057830-19057914)
chr1 (26-110)||(36146875-36146958)
chr1 (69-122)||(33485328-33485381)
chr1 (63-131)||(24438948-24439016)
chr1 (31-119)||(50317018-50317106)
chr1 (64-125)||(46604436-46604497)
chr1 (63-120)||(31321011-31321068)
chr1 (75-120)||(33981506-33981551)
chr1 (75-119)||(44268891-44268935)
[»] scaffold0633 (1 HSPs)
scaffold0633 (7-128)||(6838-6959)
[»] chr8 (15 HSPs)
chr8 (26-120)||(25264342-25264436)
chr8 (26-126)||(25265868-25265968)
chr8 (31-120)||(3158005-3158094)
chr8 (26-120)||(33295409-33295502)
chr8 (26-120)||(33293941-33294036)
chr8 (64-120)||(22714050-22714106)
chr8 (31-120)||(39886044-39886133)
chr8 (71-121)||(31819050-31819100)
chr8 (63-120)||(15279633-15279690)
chr8 (63-120)||(15460002-15460059)
chr8 (68-120)||(31916973-31917025)
chr8 (31-120)||(39884618-39884707)
chr8 (65-120)||(17706167-17706222)
chr8 (63-129)||(26719378-26719444)
chr8 (73-109)||(27166778-27166814)
[»] chr5 (16 HSPs)
chr5 (14-123)||(8872519-8872628)
chr5 (15-120)||(8874226-8874331)
chr5 (26-122)||(25916241-25916337)
chr5 (26-120)||(1418899-1418993)
chr5 (26-120)||(30332285-30332379)
chr5 (26-120)||(30333970-30334064)
chr5 (14-120)||(39101717-39101823)
chr5 (14-121)||(36619545-36619653)
chr5 (14-120)||(36621177-36621283)
chr5 (26-120)||(39103374-39103468)
chr5 (63-120)||(16308567-16308624)
chr5 (26-120)||(38624718-38624812)
chr5 (26-120)||(38626133-38626227)
chr5 (35-120)||(27756757-27756842)
chr5 (26-88)||(11772663-11772725)
chr5 (72-120)||(16310108-16310156)
[»] chr3 (14 HSPs)
chr3 (14-119)||(31656956-31657062)
chr3 (26-120)||(33732967-33733061)
chr3 (26-120)||(53527972-53528066)
chr3 (26-119)||(33734465-33734558)
chr3 (26-126)||(31796797-31796897)
chr3 (26-120)||(53529497-53529591)
chr3 (26-120)||(40499215-40499309)
chr3 (26-120)||(41081804-41081898)
chr3 (31-119)||(30700299-30700387)
chr3 (26-126)||(48568493-48568593)
chr3 (26-120)||(41083233-41083328)
chr3 (26-120)||(48566998-48567092)
chr3 (31-119)||(41879927-41880015)
chr3 (26-104)||(31795391-31795469)
[»] scaffold0489 (2 HSPs)
scaffold0489 (26-120)||(6778-6872)
scaffold0489 (70-120)||(5377-5429)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 31537458 - 31537328
Alignment:
Q  123 aaaataaaattatataatctttgttggagagtt---aagagtgaatacaaatacaaattttttgtaaaatatgcccgcaaatatttatatgnnnnnnngt 219  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||||||||       ||    
T  31537458 aaaataaaattatataatctttgttggagagttgttaagagtgaatacaaatacaaaagttttgtaaaatatgcccgcaaatatttatatgaaataaagt 31537359  T
Q  220 agtccacaaatgcctatatgatgaaatgtct 250  Q
    |||||||||||||||||||||||||||||||    
T  31537358 agtccacaaatgcctatatgatgaaatgtct 31537328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 10337215 - 10337104
Alignment:
Q  11 gatgaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgattta 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||    
T  10337215 gatgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgattta 10337116  T
Q  111 gatatttaagtc 122  Q
     |||||||||||    
T  10337115 catatttaagtc 10337104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 48713413 - 48713519
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||| ||||||||||||||||||||| ||    
T  48713413 gaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacat 48713512  T
Q  114 atttaag 120  Q
    |||||||    
T  48713513 atttaag 48713519  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 44251701 - 44251607
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||| |||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  44251701 gttattaacttacaagggttgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 44251607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 19994594 - 19994500
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  19994594 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 19994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 19996017 - 19996111
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  19996017 gttattaacttacaggggttgttttagaacaaaaaaagatacagggaccaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 19996111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 32082584 - 32082690
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| |||||||||||||||||||| |||||||||       |||||| ||||||||||||||||||| |||||||||| |||||||||| ||    
T  32082584 gaaaagcaaaaagttattaacttacaggggttattttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacacggacgatttacat 32082683  T
Q  114 atttaag 120  Q
    |||||||    
T  32082684 atttaag 32082690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 55948916 - 55949010
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  55948916 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaag 55949010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 42977306 - 42977200
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| |||||||||||| | |||||||||||||||       |||||| ||||||||||||||||||| |||||||||| |||||||||| ||    
T  42977306 gaaaagcaaaaagttattaacttaaatgggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacat 42977207  T
Q  114 atttaag 120  Q
    |||||||    
T  42977206 atttaag 42977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 54123496 - 54123602
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| |||||||||||||||| |||||||||||||        ||||| ||||||||||||||||||  ||||||||||||||||||||| ||    
T  54123496 gaaaagcaaaaagttattaacttacaggagttgttttagaacaaaaaaatatacagggacgaaaaccaaaaacatgccaaattacagggacgatttacat 54123595  T
Q  114 atttaag 120  Q
    |||||||    
T  54123596 atttaag 54123602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 44253136 - 44253249
Alignment:
Q  7 gagagatgaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacga 106  Q
    |||||| ||||| | ||| |||||||||||| |||||||||||||||||       |||| | ||||||||||||||||||| |||||||| ||||||||    
T  44253136 gagagacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatatagggacgaaaaccaaaaacacgccaaattaaagggacga 44253235  T
Q  107 tttagatatttaag 120  Q
    |||| |||||||||    
T  44253236 tttacatatttaag 44253249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 42978870 - 42978976
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| |||  ||||||||||||| || ||||||||||||       |||||| ||||||||||||||||||| |||||||||| |||||||||| ||    
T  42978870 gaaaagcaaaaaattattaacttacaaggattgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacat 42978969  T
Q  114 atttaag 120  Q
    |||||||    
T  42978970 atttaag 42978976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 48711954 - 48711854
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||| ||||| |||||||| |||||||||       ||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||    
T  48711954 gttatcaacttgcaggggttattttagaacaaaaaaagatacaaggacgaaaacaaaaaacacgcaaaattacaaggacgatttacatatttaagtcaaa 48711855  T
Q  126 a 126  Q
    |    
T  48711854 a 48711854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 18597855 - 18597911
Alignment:
Q  64 atacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  18597855 atacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 18597911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 53355196 - 53355088
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnnga--tacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtca 123  Q
    ||||||||||||||||||||||||||||||        |  ||||  ||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  53355196 gttattaacttacaggggttgttttagaacacaaaaaaaaatacagagacaaaaacaaaaaacacaccaaattacagggacaatttacatatttaagtca 53355097  T
Q  124 aaataaaat 132  Q
    ||| |||||    
T  53355096 aaaaaaaat 53355088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 54121935 - 54121827
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacaca--ccaaattacagggacgatttag 111  Q
    ||||||| ||| ||||||||||||||||||||||||||||||       |||||| |||||||||| ||||| | |   ||||||||||||||||||||     
T  54121935 gaaaagcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaaaaaaatgtcaaattacagggacgatttac 54121836  T
Q  112 atatttaag 120  Q
    |||||||||    
T  54121835 atatttaag 54121827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 18597728 - 18597634
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||| | |||||||||||||        |||||| |||||||||||||||||||  ||||||||| |||||||||| |||||||||    
T  18597728 gttattaacttacggaggttgttttagaataaaaaaagatacagggacgaaaaccaaaaacacggcaaattacatggacgatttaaatatttaag 18597634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 55947456 - 55947362
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||| ||||||| |||       |||||| |||||||||||||||| ||  |||||||||||||||||||| |||||||||    
T  55947456 gttattaacttataggggctgttttataacaaaaaaagatacagggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaag 55947362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 24919143 - 24919049
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    |||||||||||||||||||||||||       |||||| | ||||| ||||||||||| | || ||||||| |||||||| ||||||||| ||||    
T  24919143 taacttacaggggttgttttagaacaaaaaaagatacaggaacgaagaccaaaaacacgcaaacttacaggtacgatttacatatttaagccaaa 24919049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 10338119 - 10338226
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaac--nnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttag 111  Q
    ||||||| ||| |||||||||||||||||||||||||| |||         ||||||  ||| |||||||||||||| | |||||||| ||||||||||     
T  10338119 gaaaagcaaaaagttattaacttacaggggttgttttaaaacaaaaaaaaagatacagagacaaaaaccaaaaacacgcaaaattacatggacgatttac 10338218  T
Q  112 atatttaa 119  Q
    ||||||||    
T  10338219 atatttaa 10338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 22309106 - 22309194
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||||||||||||||||        |||||| |||| |||||||||||||| | || |||||||||| ||||| ||||||||    
T  22309106 taacttacaggggttgttttagaataaaaaaagatacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaa 22309194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 33609344 - 33609401
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  33609344 gatacaaggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 33609401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 42889810 - 42889867
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| ||||||||   || |||||||||||||||| |||||||||    
T  42889810 gatacaaggacgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaag 42889867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 28695977 - 28695911
Alignment:
Q  65 tacaaggacgaaaaccaaaaacacac-caaattacagggacgatttagatatttaagtcaaaataaaa 131  Q
    |||||||||||||| ||||| ||| | |||||||||||||||| ||| ||||||||||| ||||||||    
T  28695977 tacaaggacgaaaatcaaaa-cacgctcaaattacagggacgaattacatatttaagtctaaataaaa 28695911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 33607558 - 33607471
Alignment:
Q  32 aacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||| |||||||||||        |||||||||||||||||||||||||| | || |||||| |||  |||| ||||||||    
T  33607558 aacttacagggtttgttttagaaaaaaaaaagatacaaggacgaaaaccaaaaacacgcgaacttacagagaccttttacatatttaa 33607471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 38157077 - 38157023
Alignment:
Q  65 tacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||| ||||||||||||||||||| | || ||||||||| |||||| ||||||||    
T  38157077 tacagggacgaaaaccaaaaacacgcgaacttacagggatgatttacatatttaa 38157023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 54535030 - 54534981
Alignment:
Q  70 ggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||||||||||| | || ||||| |||||||||| ||||||||    
T  54535030 ggacgaaaaccaaaaacacgcgaacttacatggacgatttacatatttaa 54534981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 54536697 - 54536753
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||| |||| |||||||| ||||| | || |||||||||||||||| ||||||||    
T  54536697 gatacatggacaaaaaccaagaacacgcgaatttacagggacgatttacatatttaa 54536753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 8752751 - 8752859
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||||||||||||||| ||||||||||||||||||       |||||| ||||||||||||||||||| ||||||||||| ||||||||| ||    
T  8752751 gaaaagcaaaaggttattaacttgcaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagagacgatttacat 8752850  T
Q  114 atttaagtc 122  Q
    |||||||||    
T  8752851 atttaagtc 8752859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 2956186 - 2956292
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| ||||||||||||| || |||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  2956186 gaaaagcaaaaagttattaacttacgggagttgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacatcaaattacagggacgatttacat 2956285  T
Q  114 atttaag 120  Q
    |||||||    
T  2956286 atttaag 2956292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 8745540 - 8745434
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||       |||| | ||||||||||||||||||| ||||||||||||||||||||| ||    
T  8745540 gaaaagcaaaaagttattaacttacgggggttgttttagaacaaaaaaagatatagggacgaaaaccaaaaacacgccaaattacagggacgatttacat 8745441  T
Q  114 atttaag 120  Q
    |||||||    
T  8745440 atttaag 8745434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 1258399 - 1258497
Alignment:
Q  22 aaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||| |||||||| || |||||||||||||||||       |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  1258399 aaagtttattaacctataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 1258497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 1256810 - 1256716
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||||||||||||||        |||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  1256810 gttattaacttataggggttgttttagaataaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaag 1256716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 19084083 - 19084177
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||| ||||||||||||||||||||       |||||| |||| |||||||||||||| | |||||||||||||| |||| |||||||||    
T  19084083 gttattaacatacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgctaaattacagggacggtttacatatttaag 19084177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 7678647 - 7678704
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  7678647 gatacaaggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaag 7678704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 8230166 - 8230072
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8230166 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacaccaaattacagggacgatttacatatttaag 8230072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 31393622 - 31393716
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||||||||||||| |||       |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  31393622 gttattaacttacaggggttgttttataacaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 31393716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 40028553 - 40028460
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||| |||||||||||||||||       |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  40028553 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 40028460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 8231597 - 8231691
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| |||| |||||||||||||  ||||||||||||||||||||| |||||||||    
T  8231597 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacaagccaaattacagggacgatttacatatttaag 8231691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 31392154 - 31392060
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| |||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  31392154 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgtcaaattacagggacgatttacatatttaag 31392060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 45277930 - 45278024
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||||||||||| |||       |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  45277930 gttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 45278024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 21716582 - 21716676
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| |||||||| |||       |||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  21716582 gttattaacttacagggattgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaag 21716676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 21715168 - 21715074
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||| |||||||| |||       |||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  21715168 gttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaag 21715074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 15136887 - 15136996
Alignment:
Q  11 gatgaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgattta 110  Q
    |||||||| | ||| ||||||||||| || |||||||||||||||       ||| |||||||||||| ||||||||| | || ||||||||||||||||    
T  15136887 gatgaaaatcaaaaagttattaacttgcaagggttgttttagaacaaaaaaagattcaaggacgaaaatcaaaaacacgcgaatttacagggacgattta 15136986  T
Q  111 gatatttaag 120  Q
     |||||||||    
T  15136987 tatatttaag 15136996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 45276505 - 45276412
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| |||| |||||||||||| | |||||||||| ||||||| || |||||||||    
T  45276505 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaactcgccaaattaca-ggacgatctacatatttaag 45276412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 46245218 - 46245124
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  46245218 gttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 46245124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 40029992 - 40030086
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||| ||||||| || ||||||||||||||        ||||| ||| |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  40029992 gttactaacttatagaggttgttttagaacaaaaaaatatacagggatgaaaacaaaaaacacgccaaattacagggacgatttacatatttaag 40030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 46246538 - 46246632
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  46246538 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 46246632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 13420254 - 13420343
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||||||||||||       |||||| |||| |||||||||||||| | || |||||||| | ||||| |||||||||    
T  13420254 taacttacaggggttgttttagaacaaaaaaagatacagggactaaaaccaaaaacacgcaaacttacaggggccatttacatatttaag 13420343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 4675760 - 4675840
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgat 107  Q
    |||||||||||| || ||||||||||||||       |||||| ||||||||| ||||||||| ||||||||||||||||||    
T  4675760 gttattaacttatagtggttgttttagaacaaaaaa-gatacatggacgaaaatcaaaaacacgccaaattacagggacgat 4675840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 11671254 - 11671342
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||| ||||||||||||       |||||| |||||||||| |||||||| | || |||| ||||||||||| ||||||||    
T  11671254 taacttacagggtttgttttagaacaaaaatagatacatggacgaaaacaaaaaacacgcgaacttacggggacgatttacatatttaa 11671342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 21914645 - 21914680
Alignment:
Q  70 ggacgaaaaccaaaaacacaccaaattacagggacg 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  21914645 ggacgaaaaccaaaaacacaccaaattacagggacg 21914680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 12180607 - 12180693
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatattt 117  Q
    |||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || |||||||||| ||| | ||||||    
T  12180607 taacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacaattaacatattt 12180693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 30792781 - 30792821
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaa 54  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  30792781 gaaaagcaaaaagttattaacttacaggggttgttttagaa 30792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 37133617 - 37133706
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||| | ||||||||||||||||       ||||||  |||||||||||||||||| | || |||| ||||||||||| |||||||||    
T  37133617 taacttccgggggttgttttagaacaaaaaaagatacagtgacgaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 37133706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 32882681 - 32882771
Alignment:
Q  29 attaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||| | |||||||||||||||        ||||| |||| |||||||||||||  | ||||||||||||||||||| |||||||||    
T  32882681 attaacttataagggttgttttagaacaaaagaatatacatggacaaaaaccaaaaacatgc-aaattacagggacgatttacatatttaag 32882771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 28563484 - 28563378
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| |||||||||||| ||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  28563484 gaaaagcaaaaagttattaacttataggggttgttttagaagaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacat 28563385  T
Q  114 atttaag 120  Q
    |||||||    
T  28563384 atttaag 28563378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 1841718 - 1841817
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||||||||||||||||||||||||||||       |||||| |||| |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  1841718 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgccaaatttcagggacgatttacatatttaagccaaa 1841817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 1840253 - 1840159
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||    
T  1840253 gttattaacttataggggttgttttagaacaaaaaaagatacaagaacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 1840159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 13947843 - 13947751
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||| |||||||||||||||||       ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  13947843 gttattaacttataggggttgttttagaacaaaaaaagatac-aggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 13947751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 14089032 - 14088940
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||| |||||||||||||||||       ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  14089032 gttattaacttataggggttgttttagaacaaaaaaagatac-aggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 14088940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 45499401 - 45499307
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  45499401 gttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 45499307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 40304725 - 40304825
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || ||||||||||  |||| ||||||||| ||||    
T  40304725 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagccaaa 40304824  T
Q  126 a 126  Q
    |    
T  40304825 a 40304825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 44465091 - 44465149
Alignment:
Q  64 atacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtc 122  Q
    |||||||||||| |||||||||||| | || |||||||||||||||| |||||||||||    
T  44465091 atacaaggacgagaaccaaaaacacgcgaacttacagggacgatttacatatttaagtc 44465149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 40303389 - 40303295
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  40303389 gttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 40303295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 44421342 - 44421399
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| |||||||| |||| ||||||||| |||||| |||||||||    
T  44421342 gatacaaggacgaaaacaaaaaacacgccaatttacagggatgatttacatatttaag 44421399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 45492995 - 45493089
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  45492995 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaag 45493089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 45500737 - 45500831
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  45500737 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaag 45500831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 7317480 - 7317389
Alignment:
Q  32 aacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtca 123  Q
    |||||| |||| ||||||||||||       |||||||||||||||||||||||||| | || |||||||||   |||| ||||||||||||    
T  7317480 aacttatagggtttgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacgcgaacttacagggatcttttacatatttaagtca 7317389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 34591784 - 34591727
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| ||||| |||| || ||||| |||||||||| |||||||||    
T  34591784 gatacaaggacgaaaacaaaaaatacacaaacttacatggacgatttacatatttaag 34591727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 18224847 - 18224902
Alignment:
Q  65 tacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||| |||| |||||||||||||||| |||||||||||||  |||| |||||||||    
T  18224847 tacagggactaaaaccaaaaacacactaaattacagggaccttttacatatttaag 18224902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 38730021 - 38730120
Alignment:
Q  22 aaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacg-aaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||  |||||||||||| ||||||||||||       |||||| ||||| |||||||||||||| | || ||||| ||| |||||| |||||||||    
T  38730021 aaaggtttgtaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaaccaaaaacacgcgaacttacaaggatgatttatatatttaag 38730120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 7655227 - 7655321
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  7655227 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaag 7655321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 41668388 - 41668267
Alignment:
Q  7 gagagatgaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacga 106  Q
    |||||| ||||||| ||| ||||||||||||||| ||||||||||||||        |||||  |||||||||||||||||| ||||||||||| |||||    
T  41668388 gagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaacacgccaaattacagagacga 41668289  T
Q  107 tttagatatttaagtcaaaata 128  Q
    |||| ||||||||| |||||||    
T  41668288 tttacatatttaagccaaaata 41668267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 16673219 - 16673313
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  16673219 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcaaaattacagggacgatttacatatttaag 16673313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 19249416 - 19249322
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||| ||||||||||||||||       ||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  19249416 gttattaacttaccggggttgttttagaacaaaaaaagatacaaagacgaaaaccaaaaacaatccaaattacagggacgatttacatatttaag 19249322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 28920614 - 28920712
Alignment:
Q  22 aaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||||||       |||||| |||| ||||| |||||||| ||||||||||||||||| ||| |||||||||    
T  28920614 aaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacaaaaaacacgccaaattacagggacgacttacatatttaag 28920712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33257976 - 33257883
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| ||||||||||||       ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  33257976 gttattaacttacaggg-ttgttttagaacaaaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 33257883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33278148 - 33278055
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||| ||||||||||||       ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  33278148 gttattaacttacaggg-ttgttttagaacaaaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 33278055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 33259335 - 33259429
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||||||||||| |||       |||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  33259335 gttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaag 33259429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 33279494 - 33279588
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||||||||||| |||       |||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  33279494 gttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaag 33279588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 36145440 - 36145346
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| |||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  36145440 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaag 36145346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 7653782 - 7653683
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    |||||||||||| ||||| |||||||||||       |||||| |||||||||| ||||| || ||||||||||||||||||||| ||||||||| ||||    
T  7653782 gttattaacttataggggctgttttagaacaaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagccaaa 7653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 28919179 - 28919085
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| ||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||    
T  28919179 gttattaacttataggggttgttttagaacaaaaaaagatacagggatgaaaatcaaaaacacgccaaattacagggacaatttatatatttaag 28919085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 16592080 - 16592023
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  16592080 gatacagggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaag 16592023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 13211080 - 13211168
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||||  |||||||||||       |||||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||    
T  13211080 taacttacagggtctgttttagaacaaaaagagatacagggacgaaaaccaaaaacacacaaacttacagggaagatttacatatttaa 13211168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 19057830 - 19057914
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgattta 110  Q
    |||||||||||| |||||||||||||||||       |||||| | |||||||| |||||||| ||||||||||| |||||||||    
T  19057830 gttattaacttataggggttgttttagaacaaaaaaagatacatgaacgaaaactaaaaacacgccaaattacagagacgattta 19057914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 36146875 - 36146958
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgattta 110  Q
    |||||||||||||| || ||||||||||||       ||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  36146875 gttattaacttacatggattgttttagaacaaaaaaagatac-aggacgaaaaccaaaaacacgtcaaattacagggacgattta 36146958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 33485328 - 33485381
Alignment:
Q  69 aggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtc 122  Q
    |||||||||| ||||||||||| |||||||||| |||||||| |||||||||||    
T  33485328 aggacgaaaaacaaaaacacactaaattacaggaacgatttacatatttaagtc 33485381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 24438948 - 24439016
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaaataaaa 131  Q
    |||||| ||||||||||||||||||| | || |||||||||||||||| |||||| || ||||| ||||    
T  24438948 gatacagggacgaaaaccaaaaacacgcgaatttacagggacgatttacatattttagccaaaaaaaaa 24439016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 50317018 - 50317106
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||| ||||||||||||       |||||| ||||||||| ||||||||| | || ||||| |||||||||| ||||||||    
T  50317018 taacttacagggtttgttttagaacaaaaaaagatacagggacgaaaatcaaaaacacgcgaacttacatggacgatttacatatttaa 50317106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 46604497 - 46604436
Alignment:
Q  64 atacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||||||||||||||||||||||| | || ||||||||||  |||| ||||||||| ||||    
T  46604497 atacaaggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaagccaaa 46604436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 31321068 - 31321011
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||| ||||||||||||||||||| | || ||||||||| ||||||  ||||||||    
T  31321068 gatacagggacgaaaaccaaaaacacgcgaacttacagggatgatttaactatttaag 31321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 33981551 - 33981506
Alignment:
Q  75 aaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||| || ||| |||||||||||| |||||||||    
T  33981551 aaaaccaaaaacacacgaacttatagggacgatttacatatttaag 33981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 44268935 - 44268891
Alignment:
Q  75 aaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    |||||||||||||| | || |||||||||||||||| ||||||||    
T  44268935 aaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 44268891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 6838 - 6959
Alignment:
Q  7 gagagatgaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacga 106  Q
    |||||| ||||||| ||| ||||||||||||||| ||||||||||||||        |||||  |||||||||||||||||| ||||||||||| |||||    
T  6838 gagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaacacgccaaattacagagacga 6937  T
Q  107 tttagatatttaagtcaaaata 128  Q
    |||| ||||||||| |||||||    
T  6938 tttacatatttaagccaaaata 6959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 25264436 - 25264342
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||| |||||||| |||||||| |||       |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  25264436 gttattaatttacagggattgttttaaaacaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 25264342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 25265868 - 25265968
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    |||||||||||| |||| |||||||| |||       |||||| |||||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  25265868 gttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaacaaaaaacacgccaaattacagagacgatttacatatttaagccaaa 25265967  T
Q  126 a 126  Q
    |    
T  25265968 a 25265968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 3158005 - 3158094
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||  |||||||||||       |||||| ||||||||||||||||||| | || |||||||||||||||| |||||||||    
T  3158005 taacttacagggtctgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaag 3158094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 33295409 - 33295502
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||| |||||||||||||||       |||||| |||| ||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  33295409 gttattaacttacaagggttgttttagaacaaaaaa-gatacagggacaaaaacaaaaaacacgccaaattacagagacgatttacatatttaag 33295502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33294036 - 33293941
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnn-gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||| ||| |||||||||||||||||        |||||||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  33294036 gttattaatttataggggttgttttagaacaaaaaaaagatacaaggacgaaaaccaaaaacgcgtcaaattacaaggacgatttatatatttaag 33293941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 22714050 - 22714106
Alignment:
Q  64 atacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||||||||||||| || |||||||| ||||||| |||||||||    
T  22714050 atacagggacgaaaaccaaaaacacacgaacttacaggggcgatttacatatttaag 22714106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 39886044 - 39886133
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||        |||||| |||| |||||||||||||| | || |||||||||| ||||| |||||||||    
T  39886044 taacttacaggggttgttttagaataaaaaaagatacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaag 39886133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 31819100 - 31819050
Alignment:
Q  71 gacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagt 121  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  31819100 gacgaaaaccaaaaacacacaaaattatagggacgatttatttatttaagt 31819050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 15279633 - 15279690
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||| |||||||||||||||||| | || ||||| |||||||||| |||||||||    
T  15279633 gatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaag 15279690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 15460002 - 15460059
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||| |||||||||||||||||| | || ||||| |||||||||| |||||||||    
T  15460002 gatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaag 15460059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 31917025 - 31916973
Alignment:
Q  68 aaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||  ||||||||||||||||||| ||||||| || |||||||||    
T  31917025 aaggacgaaaataaaaaacacaccaaattacatggacgatatacatatttaag 31916973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 39884707 - 39884618
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||| ||||| |||||||||       |||||| |||| |||||||||||||| | || |||||||||| ||||| |||||||||    
T  39884707 taacttacaagggttattttagaacaaaaaaagatacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaag 39884618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 17706222 - 17706167
Alignment:
Q  65 tacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||| |||||||||||||| | |||||||||||||  |||| |||||||||    
T  17706222 tacaaggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaag 17706167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 26719444 - 26719378
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaaataa 129  Q
    ||||||||||||||||| |||||||| | || ||||| ||| |||||| |||| |||| ||||||||    
T  26719444 gatacaaggacgaaaacaaaaaacacgcgaacttacatggatgatttacatatataagccaaaataa 26719378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 27166814 - 27166778
Alignment:
Q  73 cgaaaaccaaaaacacaccaaattacagggacgattt 109  Q
    |||||| |||||||||||||||||||| |||||||||    
T  27166814 cgaaaagcaaaaacacaccaaattacaaggacgattt 27166778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 8872628 - 8872519
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||       |||||| | ||||||||||||||||| ||||||||||||||||| ||| ||    
T  8872628 gaaaagcaaaaagttattaacttatgggggttgttttagaacaaaaaaagatacaggaacgaaaaccaaaaacacgccaaattacagggacgaattacat 8872529  T
Q  114 atttaagtca 123  Q
    ||||||||||    
T  8872528 atttaagtca 8872519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 8874226 - 8874331
Alignment:
Q  15 aaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagata 114  Q
    |||||| ||| ||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||   |||||||||||||||||||| |||    
T  8874226 aaaagcaaaaagttattaacttacaggggttgttttagaacaaaaaaatatacagggacgaaaaccaaaaacaggtcaaattacagggacgatttacata 8874325  T
Q  115 tttaag 120  Q
    ||||||    
T  8874326 tttaag 8874331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 25916241 - 25916337
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtc 122  Q
    |||||||||||| |||||||||||||||||       |||||| |||| |||||||||||||| |||||||||| |||||||||| |||||||||||    
T  25916241 gttattaacttataggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgccaaattacatggacgatttacatatttaagtc 25916337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 1418899 - 1418993
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| |||||||||| ||||||||  |||||||||||||||||||| |||||||||    
T  1418899 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaaacacgtcaaattacagggacgatttacatatttaag 1418993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 30332379 - 30332285
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||| |||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  30332379 gttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaag 30332285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 30333970 - 30334064
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||       |||||| |||| |||||||||||||| |||||||| |||||||| ||| |||||||||    
T  30333970 gttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgccaaattatagggacgacttacatatttaag 30334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 39101823 - 39101717
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||       || |||   ||||||||||||||| ||||||||||||||||||||||| ||    
T  39101823 gaaaagcaaaaagttattaacatacaggggttgttttagaacaaaaaaagacacagaaacgaaaaccaaaaacgcaccaaattacagggacgatttacat 39101724  T
Q  114 atttaag 120  Q
    |||||||    
T  39101723 atttaag 39101717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 36619653 - 36619545
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnn-gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttaga 112  Q
    ||||||| ||| | |||||||||| |||||||||||||||||        |||||| ||||||||| ||||||||| |||||||| |||||||||||| |    
T  36619653 gaaaagcaaaaagctattaacttataggggttgttttagaacaaaaaaaagatacagggacgaaaatcaaaaacacgccaaattatagggacgatttaca 36619554  T
Q  113 tatttaagt 121  Q
    |||||||||    
T  36619553 tatttaagt 36619545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 36621177 - 36621283
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagat 113  Q
    ||||||| ||| ||||||||  |||| |||||||||||||||       |||||  |||||||||||||| || |||||||||||||| |||||||| ||    
T  36621177 gaaaagcaaaaagttattaatgtacaagggttgttttagaacaaaaaaagatacgtggacgaaaaccaaagacgcaccaaattacaggaacgatttacat 36621276  T
Q  114 atttaag 120  Q
    |||||||    
T  36621277 atttaag 36621283  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 39103374 - 39103468
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| | |||||||||||||||       |||||  | ||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  39103374 gttattaacttatacgggttgttttagaacaaaaaaagatactggaacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaag 39103468  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 16308624 - 16308567
Alignment:
Q  63 gatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||| ||||||||||||||||||| | || |||||||||||||||| |||||||||    
T  16308624 gatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaag 16308567  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 38624812 - 38624718
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  38624812 gttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 38624718  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 38626133 - 38626227
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||  | || ||||||||||  |||| |||||||||    
T  38626133 gttatcaacttacagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaaacatgcgaacttacagggaccttttacatatttaag 38626227  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 27756757 - 27756842
Alignment:
Q  35 ttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||| ||||||||||||       |||||| |||||||||| |||||||| | || ||| |||||||||||| |||||||||    
T  27756757 ttacagggtttgttttagaacaaaaaaagatacagggacgaaaacaaaaaacacgcgaacttagagggacgatttacatatttaag 27756842  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 11772663 - 11772725
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacac 88  Q
    |||||||||||||| |||||||||||||||       |||||  |||||||||||||||||||    
T  11772663 gttattaacttacaagggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacac 11772725  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 16310108 - 16310156
Alignment:
Q  72 acgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||| || || ||||| |||||||||| |||||||||    
T  16310108 acgaaaaccaaaaacatacgaacttacatggacgatttacatatttaag 16310156  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 31657062 - 31656956
Alignment:
Q  14 gaaaagcgaaaggttattaacttacaggggttgttttagaacnnnnnnnga-tacaaggacgaaaaccaaaaacacaccaaattacagggacgatttaga 112  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||        | |||||||||||||||||||||||  ||||||||||||||||||||| |    
T  31657062 gaaaagcaaaaagttattaacttacagggattgttttagaacaaaaaaaaaatacaaggacgaaaaccaaaaacatgccaaattacagggacgatttaca 31656963  T
Q  113 tatttaa 119  Q
    |||||||    
T  31656962 tatttaa 31656956  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33733061 - 33732967
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| |||||||||||||||||        ||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  33733061 gttattaacttataggggttgttttagaacaaaaaaaaatacaggaacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 33732967  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 53528066 - 53527972
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||||||| |||||||||||||       |||||| ||||||||||||||||||| |||||||| |||||||||||| | |||||||    
T  53528066 gttattaacttacaggagttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattaaagggacgatttacacatttaag 53527972  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 33734465 - 33734558
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||||||||||||||||||||||       |||||| | || |||||||||||||| | ||||||||||||||||||| ||||||||    
T  33734465 gttattaacttacaggggttgttttagaacaaaaaaagatacaggaaccaaaaccaaaaacacgctaaattacagggacgatttacatatttaa 33734558  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 31796797 - 31796897
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| ||||||||| ||||    
T  31796797 gttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagccaaa 31796896  T
Q  126 a 126  Q
    |    
T  31796897 a 31796897  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 53529497 - 53529591
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    |||||||||||| ||||| | |||||||||       |||||| |||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  53529497 gttattaacttataggggctattttagaacaaaaaaagatacagggacgaaaactaaaaatacgccaaattacagggacgatttacatatttaag 53529591  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 40499215 - 40499309
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||| ||||||||||||||||       |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  40499215 gttattaacttaccggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 40499309  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 41081898 - 41081804
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       |||||| ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  41081898 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaag 41081804  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 30700387 - 30700299
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||||||  |||||||||||       |||||||||||||||||||||||||| | || ||| || ||||||||| ||||||||    
T  30700387 taacttacagggtgtgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacgcgaacttaaagagacgatttacatatttaa 30700299  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 48568493 - 48568593
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaagtcaaa 125  Q
    ||||||||||||||||||||||||||||||        ||||  ||||||||||||||||||| | || |||||| |||  |||| ||||||||| ||||    
T  48568493 gttattaacttacaggggttgttttagaacaaaaaaaaatacggggacgaaaaccaaaaacacgcgaacttacagagaccttttacatatttaagccaaa 48568592  T
Q  126 a 126  Q
    |    
T  48568593 a 48568593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 41083233 - 41083328
Alignment:
Q  26 gttattaacttacaggggttgttttagaac-nnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||||||||||||||||        |||||  ||||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  41083233 gttattaacttacaggggttgttttagaacaaaaaaaagatacggggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaag 41083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 48567092 - 48566998
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||| ||||||||||| ||||||||||||       ||||||  |||||||||||||||||| | || ||||||||||  |||| |||||||||    
T  48567092 gttatcaacttacagggtttgttttagaacaaaaaaagatacagtgacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaag 48566998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 41880015 - 41879927
Alignment:
Q  31 taacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaa 119  Q
    ||||||||| || ||||||||||||       ||||||  |||||||||||||||||||| || ||||||  |||||||| ||||||||    
T  41880015 taacttacaaggtttgttttagaacaaaaaaagatacagagacgaaaaccaaaaacacacgaacttacagaaacgatttacatatttaa 41879927  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 31795469 - 31795391
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggac 104  Q
    ||||| ||||||||||| ||||||||||||       |||||| || |||||||||||||||| | || ||||||||||    
T  31795469 gttatcaacttacagggtttgttttagaacaaaaaaagatacagggccgaaaaccaaaaacacgcgaacttacagggac 31795391  T

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Target: scaffold0489 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 6778 - 6872
Alignment:
Q  26 gttattaacttacaggggttgttttagaacnnnnnnngatacaaggacgaaaaccaaaaacacaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||| |||||||| | |||||||||       |||||| | || |||||||||||||| ||||||||||| ||||||||| |||||||||    
T  6778 gttattaacatacaggggatattttagaacaaaaaaagatacaggaacaaaaaccaaaaacacgccaaattacagagacgatttacatatttaag 6872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 5429 - 5377
Alignment:
Q  70 ggacgaaaaccaaaaac--acaccaaattacagggacgatttagatatttaag 120  Q
    ||||||||||||||||   || ||||||||||||||||||||| |||||||||    
T  5429 ggacgaaaaccaaaaaacaacgccaaattacagggacgatttacatatttaag 5377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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