View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_3 (Length: 540)
Name: NF11269_high_3
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 31188984 - 31188469
Alignment:
| Q |
15 |
tcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188984 |
tcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatc |
31188885 |
T |
|
| Q |
115 |
ttatgtggaagtaactagtaagccgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188884 |
ttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
31188785 |
T |
|
| Q |
215 |
aatagcatcgaannnnnnnnn-aggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188784 |
aatagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
31188685 |
T |
|
| Q |
314 |
ttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttgctatgaatttgtttttag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31188684 |
ttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttgctatgaatttgattttag |
31188585 |
T |
|
| Q |
414 |
ataggatggtttatgatggtttcttcttgctgcgttggcaactttgattgatgtagggaggttttttcttgtgggtaggtgggtgtggaactttagtgtg |
513 |
Q |
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| T |
31188584 |
ata-gatggtttatgatggtttcttcttgctgcgttggcaactttgatcgatgtagggaggttttttcttgtgggtaggtggatgtggaactttagtgtg |
31188486 |
T |
|
| Q |
514 |
ggtgatgttggtctctg |
530 |
Q |
| |
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||||||||| ||||||| |
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| T |
31188485 |
ggtgatgttagtctctg |
31188469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 31200791 - 31200445
Alignment:
| Q |
15 |
tcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatc |
114 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200791 |
tcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatc |
31200692 |
T |
|
| Q |
115 |
ttatgtggaagtaactagtaagccgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200691 |
ttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
31200592 |
T |
|
| Q |
215 |
aatagcatcgaa-nnnnnnnnnaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200591 |
aatagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
31200492 |
T |
|
| Q |
314 |
ttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200491 |
ttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
31200445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 389 - 530
Target Start/End: Complemental strand, 31200450 - 31200309
Alignment:
| Q |
389 |
tcttttgctatgaatttgtttttagataggatggtttatgatggtttcttcttgctgcgttggcaactttgattgatgtagggaggttttttcttgtggg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200450 |
tcttttgctatgaatttgtttttagataggatggtttatgatggtttcttcttgctgcgttggcaactttgattgatgtagggaggttttttcttgtggg |
31200351 |
T |
|
| Q |
489 |
taggtgggtgtggaactttagtgtgggtgatgttggtctctg |
530 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31200350 |
taggtggatgtggaactttagtgtgggtgatgttggtctctg |
31200309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
70 |
tatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
144 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||| |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 31144869 - 31144770
Alignment:
| Q |
28 |
ataatgttatcatcttaa-atcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagt |
126 |
Q |
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|||||||||||||||| | | |||||||||||| |||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
31144869 |
ataatgttatcatctttataacctttagaagtttgttgctgcatatgctacaa-tggagaacatgttatactagaaaatatttttatcttatttggaagt |
31144771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 31225168 - 31225277
Alignment:
| Q |
23 |
aattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtgg |
122 |
Q |
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|||| ||||| ||| |||| || |||||||| ||||||| |||| || |||||||||| | |||||||||||||| |||| | |||||||||||||| |
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| T |
31225168 |
aatttataattttaacatcatatatcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaa--agtttatcttatgtgg |
31225265 |
T |
|
| Q |
123 |
aagtaactagta |
134 |
Q |
| |
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||| |||||||| |
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| T |
31225266 |
aagcaactagta |
31225277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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