View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11269_high_31 (Length: 250)
Name: NF11269_high_31
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_31 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 3077802 - 3077684
Alignment:
| Q |
132 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctttgtgcattgctcggtagcgagaggggtttggttggagttgtttaagtg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3077802 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctctgtgcattgcttggtagcgagaggggtttggttggagttgtttaagtg |
3077703 |
T |
|
| Q |
232 |
ggttgattactcgtttatt |
250 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
3077702 |
ggtcaattactcgtttatt |
3077684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 3077881 - 3077829
Alignment:
| Q |
17 |
actttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3077881 |
actttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
3077829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 44692724 - 44692825
Alignment:
| Q |
17 |
actttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttagtaggaggaatgcc |
116 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| |||| ||||||||| |
|
|
| T |
44692724 |
actttggaaaagcccggctccgtcaaaagtggtggccctttcttggaaagttttgcttgatcgtattccgacgcggtggaatcttcgtagaaggaatgcc |
44692823 |
T |
|
| Q |
117 |
ct |
118 |
Q |
| |
|
|| |
|
|
| T |
44692824 |
ct |
44692825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 15316226 - 15316260
Alignment:
| Q |
18 |
ctttggaaaagtccggctccgtctaaggtggtggc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15316226 |
ctttggaaaagtccggctccgtctaaggttgtggc |
15316260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 34866468 - 34866382
Alignment:
| Q |
17 |
actttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttag |
103 |
Q |
| |
|
|||||||||||| ||||| || || || |||||||| ||||| |||| || |||||||||||||| ||| |||| || |||||||| |
|
|
| T |
34866468 |
actttggaaaagcccggccccctcaaaagtggtggccctttcttggaaagtcttgcttgatcgtattccgtcgcgattgaatcttag |
34866382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 14248808 - 14248764
Alignment:
| Q |
19 |
tttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
63 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
14248808 |
tttggaagagtccggctccgtctaaggcggtggctctttcttgga |
14248764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University