View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_4 (Length: 503)
Name: NF11269_high_4
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 27 - 486
Target Start/End: Complemental strand, 33988820 - 33988356
Alignment:
| Q |
27 |
gatacatatatcggtaatgtgatggaaaagagatatagacataaaataaagtattgaaaaggttgtgtgtgtgaatttcggtaatatttctagtttcttc |
126 |
Q |
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| T |
33988820 |
gatacatatatcggtaatgtgatggaaaagagatatagacataaaataaagtattgaaaaggttgtgtgtgtgaatttcgataatatttctcgtttcttc |
33988721 |
T |
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| Q |
127 |
tataaattatatttgtgtgcgggatagaggttaccttagaccgttaacatatcaacttctttaatcatttagatcaaatcaattgaattgttctacatct |
226 |
Q |
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| T |
33988720 |
tataaattatatttgtgtgcgggatagaggttaccttagactgttaacatatcaacttctttaatcatttagatcaaatcaattgaattgttctacatct |
33988621 |
T |
|
| Q |
227 |
tctatacattattaaaaatgacttatattctgccaaaaacaataattacatttcccgtaaaaaatattgacatggagatatactcaatttcttctgtttt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33988620 |
tctatacattattaaaaatgacttatattctgccaaaaacaataattacatttcccgtaaaaaatattgacatggagatatactcaattttttctgttt- |
33988522 |
T |
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| Q |
327 |
aaatatttgatcacgtcattttccttaagatccataattcaatcttatttgttagtattaatattaatatcatcgtgacatcctcgtggaaaagcataat |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33988521 |
--atatttgatcacgtcattttccttaagatccataattcaatcttatttgtaagtattaatattaatatcatcgtgacatcctcgtggaaaagcataat |
33988424 |
T |
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| Q |
427 |
aaaaaacattat--------ctacattattacatgagtatagtttggttaacagagacatatattgtt |
486 |
Q |
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||||| |||| | ||||||||| |||||| |||||||| |||||||||||||| |||||| |
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| T |
33988423 |
aaaaagcattttctacatgactacattatcccatgagcatagtttgattaacagagacatacattgtt |
33988356 |
T |
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