View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_5 (Length: 480)
Name: NF11269_high_5
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 209 - 461
Target Start/End: Complemental strand, 28711701 - 28711452
Alignment:
| Q |
209 |
gaagaagctaaagtgacgtagatgatattaacatggtgaatgtttcgccgtcataaaatgtagtagctccccattgaaaaggatatggaaccacatatgg |
308 |
Q |
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| T |
28711701 |
gaagaagctaaaatgacgtagatgatattaacatggtgaatgtttcgccatcataaaatgtaggagctccccattgaaaaggatatggaaccacatatgg |
28711602 |
T |
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| Q |
309 |
gatagaatcagttaagtggtttcatttcatgatatgtttattgtgcacttttcttccatggaagttatgttcaactttgagatagaatccaaatgcggtt |
408 |
Q |
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| T |
28711601 |
gatagaatgagttaagtggtt-----tcatgatatgtttattgtgcacttttcttccatggaagttatgttcaactttgagatagaatccaaatgcggta |
28711507 |
T |
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| Q |
409 |
tgtcatgtactatgttctcgtatacttccggcaagt--taaacctgcaccaacac |
461 |
Q |
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| T |
28711506 |
tttcatgtactatgttctcgtatacttccggcaagttataaacctgcaccaacac |
28711452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 28711904 - 28711734
Alignment:
| Q |
18 |
cacagaagaagaaaaatatcattcttgtttaaaacggtaattaattaatgttcaaactctaaccaacttttgttcagaataatgagtaaaaataaaactg |
117 |
Q |
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| T |
28711904 |
cacagaagaagaaaaaaatcattcttgtttaaaacagtaattaattaatgttcaaactctaaccaacttttgttcagaataatgagtaaaaataaaactg |
28711805 |
T |
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| Q |
118 |
atcttttaatattgatagatcaattaacagtcaccgacttgagaagcaaaaatatacatccaccgacgtag |
188 |
Q |
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| T |
28711804 |
atcttttaatattgatagatcaattaacattcaccgacttgagaagcaaaaatatacatccaccgacgtag |
28711734 |
T |
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