View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11269_high_6 (Length: 462)
Name: NF11269_high_6
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_6 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 34567118 - 34567534
Alignment:
| Q |
17 |
atttctccataccagtctagttttattccatgaaagaagtaaacaccatatattattatttctcagaaaatggttcactccatgactaagatgaaaagaa |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567118 |
atttctccataccagtctaattttattccatgagagaagtaaacaccatatattattgtttctcagaaaatggttcactccatgactaagatgaaaagaa |
34567217 |
T |
|
| Q |
117 |
gcaatatgttcttgtcaattaaaactgataccgagagattatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccccctaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567218 |
gcaatatgttcttgtg------------------gagattatgatcacagcaattggaaatttgtggagaactatttggaggagtgtaaattccccctaa |
34567299 |
T |
|
| Q |
217 |
tgtcattcaaacaatccatcattgcatatcttttcctaactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcat |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567300 |
tctcattcaaacaatccatcattgcatatcttttcctaactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcat |
34567399 |
T |
|
| Q |
317 |
taaggagaccctctccccccttatctctgttattcgtatagagatattatccatataatccttgatcaggtggaagttcaatattggaagcgaatgcatg |
416 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567400 |
taaggagaccctctctccccttatttttgttattcgtatagagatattatccatataattcttgatcaggtggaagttcaatattggaagcgaatgcatg |
34567499 |
T |
|
| Q |
417 |
cagttagttctggtcctcaaatttctcatcttctt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567500 |
cagttagttctggtcctcaaatttctcatcttctt |
34567534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 111221 - 111036
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccc-cctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| |||||| |||||| || |||| | |||||||||||| ||| |
|
|
| T |
111221 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctcctaatctcattcgaattatccgtgattgcatatcttcgcct |
111122 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||| || ||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
111121 |
agttacaaaattttgtggaatggagacaaaactgacactttcactccaactagaggaattcatcaaggagaccctctctcccctta |
111036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 339
Target Start/End: Original strand, 24783072 - 24783257
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccc-cctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| |||||| ||||||||| || | | |||||||||||| ||| |
|
|
| T |
24783072 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctcctaatctcattcaaattatacgtgattgcatatcttcgcct |
24783171 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||| | ||||||| |||||| ||||||| |
|
|
| T |
24783172 |
agttacaaaattttgtggaatggggataaaactgacacgttcactccaactagaggaattcgtcaaggagatcctctctcccctta |
24783257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 35197920 - 35197735
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattcccc-ctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| ||||| ||||||||| || | | |||||||||||| ||| |
|
|
| T |
35197920 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctactaatctcattcaaattatacgtgattgcatatcttcgcct |
35197821 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||| | ||||||| |||||| ||||||| |
|
|
| T |
35197820 |
agttacaaaattttgtggaatggggataaaactgacacgttcactccaactagaggaattcgtcaaggagatcctctctcccctta |
35197735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 49574950 - 49574765
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccc-cctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| |||||| ||||||||| || | | |||||||||||| ||| |
|
|
| T |
49574950 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctcctaatctcattcaaattatacgtgattgcatatcttcgcct |
49574851 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||| | ||||||| |||||| ||||||| |
|
|
| T |
49574850 |
agttacaaaattttgtggaatggggataaaactgacacgttcactccaactagaggaattcgtcaaggagatcctctctcccctta |
49574765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 8057270 - 8057085
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccc-cctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| |||||| ||||||||| || | | ||||||||||| ||| |
|
|
| T |
8057270 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctcctaatctcattcaaattatacgtgtttgcatatcttcgcct |
8057171 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||| | ||||||| |||||| ||||||| |
|
|
| T |
8057170 |
agttacaaaattttgtggaatggggataaaactgacacgttcactccaactagaggaattcgtcaaggagatcctctctcccctta |
8057085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 46021314 - 46021129
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattcccc-ctaatgtcattcaaacaatccatcattgcatatcttttcct |
253 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| ||||| ||||||||| || | | |||||||||||| ||| |
|
|
| T |
46021314 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccctgctaatctcattcaaattatacgtgattgcatatcttcgcct |
46021215 |
T |
|
| Q |
254 |
aactacaaaattatgtggaatggggatcaaactgacactttcatccccactagaggaattcattaaggagaccctctcccccctta |
339 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||| | ||||||| |||||| ||||||| |
|
|
| T |
46021214 |
agttacaaaattttgtggaatggggataaaactgacacgttcactccaactagaggaattcgtcaaggagatcctctctcccctta |
46021129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 5306536 - 5306565
Alignment:
| Q |
17 |
atttctccataccagtctagttttattcca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5306536 |
atttctccataccagtctagttttattcca |
5306565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 23947509 - 23947538
Alignment:
| Q |
17 |
atttctccataccagtctagttttattcca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23947509 |
atttctccataccagtctagttttattcca |
23947538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 36027910 - 36027966
Alignment:
| Q |
155 |
ttatgatcacatcaattgggaatttgtggagaactatttggaggagtgtaaattccc |
211 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| | |||||||| ||||||||||| |
|
|
| T |
36027910 |
ttatgatcgcatcaattggaattttgtggagaattgcttggaggattgtaaattccc |
36027966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 54814635 - 54814606
Alignment:
| Q |
17 |
atttctccataccagtctagttttattcca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54814635 |
atttctccataccagtctagttttattcca |
54814606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University