View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_high_8 (Length: 434)
Name: NF11269_high_8
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 9090925 - 9090614
Alignment:
| Q |
3 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaa |
102 |
Q |
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| T |
9090925 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttggtgaggataggaaatcttctcagttggttttgtaaaa |
9090826 |
T |
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| Q |
103 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
202 |
Q |
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| T |
9090825 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
9090726 |
T |
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| Q |
203 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttg |
302 |
Q |
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| T |
9090725 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttg |
9090626 |
T |
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| Q |
303 |
aacttaaagcaa |
314 |
Q |
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| T |
9090625 |
aacttaaagcaa |
9090614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 9095229 - 9094973
Alignment:
| Q |
45 |
atgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaatcagcaacattggcaacggtgataccccacttaaatgcaggt |
144 |
Q |
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| T |
9095229 |
atgcatgcgcatacctatttgttgaggataggaaagcttctcaggtggttttgcaaaatcagcaatattggcaatgctgataccccacttaaatgtaggg |
9095130 |
T |
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| Q |
145 |
gcccaaaagtgaactgcacaacaaaagtggtcaattaatggattga-tacaggtttgacaataacaatgctaacacttgacaacaacactggtgactgga |
243 |
Q |
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| T |
9095129 |
gcccaaaagtgaactgcacaaaataagtggtcaatttatacatcgattaca-gcttcacaatgtcaatattaacacttgaaaacaacattggtgactgga |
9095031 |
T |
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| Q |
244 |
aacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttgaacttaaag |
311 |
Q |
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| T |
9095030 |
aa-------gagacaacagtttgaatcaggtgaa---aatgtaatctatttggtacttgtacttaaag |
9094973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 9090617 - 9090556
Alignment:
| Q |
358 |
gcaatagttaatcacggccgttgattcaacataatcacgcagttagtgtcatgcggtaaaat |
419 |
Q |
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| T |
9090617 |
gcaatagttaatcacggccgttaattcaacataatcacacagttagtgtcatgcggtaaaat |
9090556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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