View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_11 (Length: 399)
Name: NF11269_low_11
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 28314838 - 28314459
Alignment:
| Q |
1 |
cttcatgatagctacgattacggtcaaccagtttatttaaaatttaaaaccttgtgcatgtgttgatcaacaaattaaaccaacacaaatttatatagtt |
100 |
Q |
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| T |
28314838 |
cttcatgatagctacgattacggtcagccagtttatttaaaatttaaaaccttgtgcatgtgttgatcaacaaattaaaccaacacaaatttatatagtt |
28314739 |
T |
|
| Q |
101 |
cgaaatacagttaccaatatacaagaataaagatcaaaattgcatattacttaaatattttattttgataattcacttaattgtaattatacaatctcct |
200 |
Q |
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| T |
28314738 |
cgaaataca-ttaccaatatacaagaataaagatcaaaattgcatattacttaaatattttattttgataattcacttaattgtaattatacaatctcgt |
28314640 |
T |
|
| Q |
201 |
ctcatgaaatggtactatcac--ctacgtccataccttaatcatatttacttgagagatttaattgaacatgaaggtgctgcatatctagctgaaaatct |
298 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28314639 |
ctcatgaaatggtactatcacacctacgtccataccttaatcatatttacttgagagatttaattgaacatgaaggtgctgcatatctagctgaaaatct |
28314540 |
T |
|
| Q |
299 |
acggtacgattcttcgtcgtcctccatcaaaccctcatcaaagttctgagaatagcttaaaggatcataaccaaagccacc |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28314539 |
acggcacgattcttcgtcgtcctccatcaaaccctcatcaaagttctgagaatagcttaaaggatcataaccaaagccacc |
28314459 |
T |
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