View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11269_low_15 (Length: 377)
Name: NF11269_low_15
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 28731702 - 28732052
Alignment:
| Q |
11 |
gcagagaggaaaaggttgaatagttttccatgacagtgaagaagatttcaagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaa |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28731702 |
gcagagaggaaaaggttgaagagttttccatggcggtgaagaagatttcaagtctcaagagagtgaattcgagtgtgaaatgaatggaatgatgatgaaa |
28731801 |
T |
|
| Q |
111 |
tgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagattta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28731802 |
tgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgttagtttgttacgcggttgttctagattta |
28731901 |
T |
|
| Q |
211 |
aacgatttcgaatgtaagcgtgtgaatgaagc----ttttttttatggnnnnnnnttaagctc---nnnnnnnnnnnacaatggaaataattaagctctt |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
28731902 |
aacgatttcgaatgtaagcgtgcgaatgaagcttttttttttttatggaaaaaaattaagctcttttttttttttttacaatggaaataattaagctctt |
28732001 |
T |
|
| Q |
304 |
aagtaccctatattttttattcatatattaatactattttttcctccatgt |
354 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
28732002 |
aagtaccctatatattttattcatatattaatactgtttttttctccatgt |
28732052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 38122181 - 38122348
Alignment:
| Q |
56 |
tttcaagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38122181 |
tttcaagtctcaagagagtgaattcgagtgtgaattgaatcgaatgaagatgaattgcagggtgaagtatttatatacgcgcgcgcggggaaattaaacg |
38122280 |
T |
|
| Q |
156 |
gttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagatttaaacgatttcgaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
38122281 |
gttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttatagatttaaacgtttttgaat |
38122348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 38607903 - 38607792
Alignment:
| Q |
88 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
187 |
Q |
| |
|
||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| ||||||||||| |
|
|
| T |
38607903 |
aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt |
38607806 |
T |
|
| Q |
188 |
gttacgcggttgtt |
201 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38607805 |
gttacgcggttgtt |
38607792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 38792686 - 38792575
Alignment:
| Q |
88 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
187 |
Q |
| |
|
||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| ||||||||||| |
|
|
| T |
38792686 |
aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt |
38792589 |
T |
|
| Q |
188 |
gttacgcggttgtt |
201 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38792588 |
gttacgcggttgtt |
38792575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 38607287 - 38607185
Alignment:
| Q |
88 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
187 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| |||||||||||||||| | | ||||| |||||| ||| | |||||||||||||||||||| |
|
|
| T |
38607287 |
aaatgaatggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcaagagagtgaaatggttag-aga-aatattgtaagcgtgtgagttt |
38607190 |
T |
|
| Q |
188 |
gttac |
192 |
Q |
| |
|
||||| |
|
|
| T |
38607189 |
gttac |
38607185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University