View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_16 (Length: 367)
Name: NF11269_low_16
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 18709618 - 18709817
Alignment:
| Q |
155 |
tgccttctatagagattccaagatggagagaggaagcatcgttttgttactttgtatatatcaataattaatggtcttggtgacaatattgtcgttttgg |
254 |
Q |
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| T |
18709618 |
tgccttctatagagattccaagatggagagaggaagcatcgttttgttactttgtatatatcaataattaatggtcttggtgacaatattgtcgttttgg |
18709717 |
T |
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| Q |
255 |
ttgttttcaaatcttaacttgactttgtgatgacaaaggggaccacaacttcaccaaatgactcttcccggcgacttcctacctaatgcttgttctgcct |
354 |
Q |
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| T |
18709718 |
ttgttttcaaatcttaacttgactttgtgatgacaaaggggaccacaacttcaccaaatgactcttcccggcgacttcctacctaatgcttgctctgcct |
18709817 |
T |
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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 18709481 - 18709567
Alignment:
| Q |
18 |
gagtgtactaaatttagaatggagagaggaattggttgagtggaaaataaggagtgaagagtatataaatatgagggggttataatg |
104 |
Q |
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| T |
18709481 |
gagtgtgctaaatttagaatggagagaggaattggttgagtggaaaataaggagtgaagagtatataaatatgagggggttataatg |
18709567 |
T |
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