View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_18 (Length: 354)
Name: NF11269_low_18
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 51405058 - 51404719
Alignment:
| Q |
1 |
taatgactccatcgttccatcgatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaatatcttcatgg |
100 |
Q |
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| T |
51405058 |
taatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaatatcttcatgg |
51404959 |
T |
|
| Q |
101 |
atgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcatcatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404958 |
atgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcatcatttt |
51404859 |
T |
|
| Q |
201 |
gctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagat |
300 |
Q |
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| T |
51404858 |
gttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagat |
51404759 |
T |
|
| Q |
301 |
acagagtcttcctcgctttcgggttcctcgggatgattct |
340 |
Q |
| |
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| T |
51404758 |
acagagtcttcctcgctttcgggttcctcgggatgattct |
51404719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 29981704 - 29981982
Alignment:
| Q |
65 |
cgcttttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccatagg |
164 |
Q |
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| T |
29981704 |
cgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataag |
29981803 |
T |
|
| Q |
165 |
tttggaaagcgataaccatttgatcttcat---cattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctga |
261 |
Q |
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||| || || || |||||||| |||| | ||| ||| |||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||| |
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| T |
29981804 |
cttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctga |
29981903 |
T |
|
| Q |
262 |
agatctttctgagagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctcgggatgattct |
340 |
Q |
| |
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| T |
29981904 |
aggtctttctgagagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgattct |
29981982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 8156274 - 8156085
Alignment:
| Q |
116 |
gaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcat---cattttgctttttgttcc |
212 |
Q |
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| T |
8156274 |
gaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttcc |
8156175 |
T |
|
| Q |
213 |
aaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagataca |
303 |
Q |
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| T |
8156174 |
aaa-gggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatataca |
8156085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 36613530 - 36613676
Alignment:
| Q |
194 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
293 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||||||||| |
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| T |
36613530 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattg |
36613629 |
T |
|
| Q |
294 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattct |
340 |
Q |
| |
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|||| ||||| | ||||||||||||| ||||||| ||||||||| |
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| T |
36613630 |
catatatacacaactttcctcgctttcgtgttcctcttgatgattct |
36613676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 7674915 - 7674769
Alignment:
| Q |
194 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
293 |
Q |
| |
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| T |
7674915 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattg |
7674816 |
T |
|
| Q |
294 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattct |
340 |
Q |
| |
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|||| ||||| | ||||||||||||| ||||||| ||||||||| |
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| T |
7674815 |
catatatacacaactttcctcgctttcgtgttcctcttgatgattct |
7674769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 25523753 - 25523899
Alignment:
| Q |
194 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
293 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||| | || | ||| || |||||||| | || ||||||| ||||||||||||||| || |||||||||| |
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| T |
25523753 |
tcatgttgttttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattg |
25523852 |
T |
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| Q |
294 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattct |
340 |
Q |
| |
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|||| ||||| | ||||| ||||||| ||||||| ||||||||| |
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| T |
25523853 |
catatatacacaactttccttgctttcgtgttcctcttgatgattct |
25523899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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