View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_23 (Length: 310)
Name: NF11269_low_23
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_23 |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 15080258 - 15080551
Alignment:
| Q |
19 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactag----gagagaattgaatatcacgatataataaacaacgatacaaacaaaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
15080258 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaa |
15080357 |
T |
|
| Q |
115 |
ccaagaacacaaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15080358 |
ccaagaacacaaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcagcaattcatcaattcaacatttaaacgt |
15080457 |
T |
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| Q |
215 |
aagccagatcaaaaagaaaagcgattacgagaataagtatccaa-ccccttaccttaagaaaatcgatcggtag----ctcttggttcttctctc |
304 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
15080458 |
aagctagatcaaaaagaaaagtgatt-cgagaataagtatccaacccccttaccttaagaaaatcgatctgcagttctctcttggttcttctctc |
15080551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 13515741 - 13516034
Alignment:
| Q |
19 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactag----gagagaattgaatatcacgatataataaacaacgatacaaacaaaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
13515741 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaa |
13515840 |
T |
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| Q |
115 |
ccaagaacacaaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13515841 |
ccaagaacacaaataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaatgt |
13515940 |
T |
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| Q |
215 |
aagccagatcaaaaagaaaagcgattacgagaataagtatccaacccc-ttaccttaagaaaatcgatcggtagctct----tggttcttctctc |
304 |
Q |
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|||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
13515941 |
aagctagatcaaaa-gaaaagtgattacgagaataagtatccaacccccttaccttaagaaaatcgatcggcagctctctcttggttcttctctc |
13516034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 15684882 - 15684615
Alignment:
| Q |
19 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaacc-a |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
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| T |
15684882 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaa |
15684783 |
T |
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| Q |
118 |
agaacacaaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
15684782 |
agaacacaaataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcaaca-------atttaaacgtaag |
15684690 |
T |
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| Q |
218 |
ccagatcaaaaagaaaagcgattacgagaataagtatccaa-ccccttaccttaagaaaatcgatcggtagctct |
291 |
Q |
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| ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
15684689 |
ctagatcaaaaagaaaattgtttatgagaataagtatccaacccccttaccttaagaaaatcgatcggcagctct |
15684615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 32655681 - 32655755
Alignment:
| Q |
19 |
atagcaaccttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataat |
93 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||| |||||||||| |
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| T |
32655681 |
atagcaaccttgaacaaacagtgttgcacaacaatccagaacacaccagtagagaattgtatataacgatataat |
32655755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 1395 - 1360
Alignment:
| Q |
170 |
ttcaccaaacaaaatcatcaattcatcaattcaaca |
205 |
Q |
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| T |
1395 |
ttcacaaaacaaaatcatcaattcatcaattcaaca |
1360 |
T |
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