View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11269_low_25 (Length: 269)

Name: NF11269_low_25
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11269_low_25
NF11269_low_25
[»] chr1 (19 HSPs)
chr1 (18-257)||(9488314-9488553)
chr1 (61-227)||(9435819-9435985)
chr1 (139-257)||(9463841-9463959)
chr1 (18-143)||(9459151-9459276)
chr1 (18-143)||(9462978-9463103)
chr1 (36-130)||(9454061-9454155)
chr1 (39-130)||(9318524-9318615)
chr1 (36-115)||(9486441-9486520)
chr1 (40-130)||(9399415-9399505)
chr1 (36-116)||(9433088-9433168)
chr1 (39-130)||(9319687-9319778)
chr1 (39-130)||(9350004-9350095)
chr1 (34-134)||(9143101-9143201)
chr1 (34-128)||(8964292-8964386)
chr1 (36-130)||(9255262-9255356)
chr1 (40-113)||(9234313-9234386)
chr1 (40-113)||(9384008-9384081)
chr1 (58-130)||(9348783-9348855)
chr1 (36-104)||(9082799-9082867)
[»] chr3 (1 HSPs)
chr3 (58-130)||(9159396-9159468)
[»] chr6 (1 HSPs)
chr6 (36-111)||(15927449-15927524)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 9488314 - 9488553
Alignment:
Q  18 catttccaaggactcgacatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488314 catttccaaggactcgacatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactatt 9488413  T
Q  118 atcatcttcttcagtatcttctcctcctcttctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488414 atcatcttcttcagtatcttctcctcctcttctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaa 9488513  T
Q  218 cttgactcttatgatcttcaccctcattcatgttccttct 257  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  9488514 cttgactcttatgatcttcactctcattcatgttccttct 9488553  T

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Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 9435819 - 9435985
Alignment:
Q  61 ttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctcctcttctgtaccattcc 160  Q
    |||||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |    
T  9435819 ttgttcattgacggacgatcaattggtttcatctgtatataccacaatgcaactattatcatcttcttcaatatcttttcctcctcttctgtaccatttc 9435918  T
Q  161 ccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactctt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9435919 ccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactctt 9435985  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 257
Target Start/End: Original strand, 9463841 - 9463959
Alignment:
Q  139 tcctcctcttctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactcttatgatcttcac 238  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9463841 tcctcctcctccgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagtgaaataaacttgactcttatgatcttcac 9463940  T
Q  239 cctcattcatgttccttct 257  Q
     ||||||||||||||||||    
T  9463941 tctcattcatgttccttct 9463959  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 9459151 - 9459276
Alignment:
Q  18 catttccaaggactcgacatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactatt 117  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||    
T  9459151 catttccaaggactcaacatctcctacaagcaactcaaccactttgttcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactatt 9459250  T
Q  118 atcatcttcttcagtatcttctcctc 143  Q
    ||||||||||||| ||||||||||||    
T  9459251 atcatcttcttcaatatcttctcctc 9459276  T

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Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 9462978 - 9463103
Alignment:
Q  18 catttccaaggactcgacatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactatt 117  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||    
T  9462978 catttccaaggactcaacatctcctacaagcaactcaaccactttgttcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactatt 9463077  T
Q  118 atcatcttcttcagtatcttctcctc 143  Q
    ||||||||||||| ||||||||||||    
T  9463078 atcatcttcttcaatatcttctcctc 9463103  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 9454155 - 9454061
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    |||||||||||| | ||| || ||||| ||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| | ||| |||||||    
T  9454155 atctccttcaagcatctctactacttttttcattgaaggacgatcaatgggtttcaactgtatacaccataatccaactatgaacattttcttca 9454061  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 9318615 - 9318524
Alignment:
Q  39 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||||| ||| | |||||||||||    
T  9318615 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgcaattatgaacatcttcttca 9318524  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 9486520 - 9486441
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaacta 115  Q
    |||||||||||| | ||| || ||||||||||| |||||||||||||| ||||||| |||||||||||| | ||||||||    
T  9486520 atctccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaacta 9486441  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 9399415 - 9399505
Alignment:
Q  40 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    |||||||| | ||| || ||||||||||| |||||||||||||| ||||||| |||||||||||| | ||||||||| | ||| |||||||    
T  9399415 ccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaactatgaacattttcttca 9399505  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 9433168 - 9433088
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactat 116  Q
    |||||||||||| | ||| || ||||||||||| |||||||||||||  ||||||| |||||||||||| | |||||||||    
T  9433168 atctccttcaagcatctctactactttgttcattgaaggacgatcaacgggtttcaactgtatacaccaaagtgcaactat 9433088  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 9319687 - 9319778
Alignment:
Q  39 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9319687 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9319778  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 9350004 - 9350095
Alignment:
Q  39 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9350004 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9350095  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 9143201 - 9143101
Alignment:
Q  34 acatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagta 133  Q
    ||||||||||| || | ||| || ||||||||||| || || ||||||  ||||||||  ||||||||||| | ||||||||| ||||||||||| ||||    
T  9143201 acatctccttcgagcatctccactactttgttcattgaggggcgatcagctggtttcaattgtatacaccaaagtgcaactatgatcatcttctttagta 9143102  T
Q  134 t 134  Q
    |    
T  9143101 t 9143101  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 8964292 - 8964386
Alignment:
Q  34 acatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttctt 128  Q
    ||||||||||| || | ||| || || |||||||| || || ||||||| |||||||| |||||||||||| | ||| ||||| |||||||||||    
T  8964292 acatctccttcgagcatctccactaccttgttcattgaggggcgatcaactggtttcaactgtatacaccaaagtgcgactatgatcatcttctt 8964386  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 9255356 - 9255262
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    |||||||||||| | ||| | |||||| ||||| || |||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9255356 atctccttcaagcatctctatcactttattcattgagggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9255262  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 9234386 - 9234313
Alignment:
Q  40 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaac 113  Q
    |||||||| | |||||| ||||||||||| |||||||||||| | ||||||| ||| |||||||| | ||||||    
T  9234386 ccttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacaccaaagtgcaac 9234313  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 9384008 - 9384081
Alignment:
Q  40 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaac 113  Q
    |||||||| | |||||| ||||||||||| | |||||||||| | ||||||| ||| |||||||| ||||||||    
T  9384008 ccttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgcaac 9384081  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 9348855 - 9348783
Alignment:
Q  58 actttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    ||||| ||||| | |||||||||| ||||||| | |||||||||||||||||||| ||| | ||| |||||||    
T  9348855 actttattcattgcaggacgatcacttggttttaactgtatacaccataatgcaattatgaacattttcttca 9348783  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 9082867 - 9082799
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacacca 104  Q
    |||||||||||| | ||| || ||| |  ||||||||||||||||| |||||||||  |||||||||||    
T  9082867 atctccttcaagcatctccactactctactcatcgaaggacgatcatttggtttcaattgtatacacca 9082799  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 9159396 - 9159468
Alignment:
Q  58 actttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 130  Q
    ||||||||||| | |||||||||| ||||||| | |||||||||||||||||||| ||| | ||| |||||||    
T  9159396 actttgttcattgcaggacgatcacttggttttaactgtatacaccataatgcaattatgaacattttcttca 9159468  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 15927524 - 15927449
Alignment:
Q  36 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgca 111  Q
    |||||||||||| | ||| | |||| ||||||| |||||||||||| ||||||| |  || |||||||||||||||    
T  15927524 atctccttcaagcatctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgca 15927449  T

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