View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_33 (Length: 241)
Name: NF11269_low_33
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 31537124 - 31537350
Alignment:
| Q |
17 |
atttgtacagaagggaacgaaaatgagaggacttccatgtgcaagccagtggcttcagaataagaattttataagaaaagtgagcttttggatggacaaa |
116 |
Q |
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| T |
31537124 |
atttgtacagaagggaacgaaaatgagaggacttccatgtgcaagccagtggcttcagaataagaattttataagaaaagtgagcttttggatggacaaa |
31537223 |
T |
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| Q |
117 |
aagatcacaacactcccannnnnnngctatttaatttacatatcacgttttatatttgcgaaatttaattg--atatgcactaaagtatttacacctgca |
214 |
Q |
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| T |
31537224 |
aagatcacaacactcccatttttttgctatttaatttacatatcacgttttatatttgcgaaatttaattgatatatgcactaaagtatttacacctgca |
31537323 |
T |
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| Q |
215 |
ttaaagacatttcatcatataggcatt |
241 |
Q |
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| T |
31537324 |
ttaaagacatttcatcatataggcatt |
31537350 |
T |
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