View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11269_low_34 (Length: 241)
Name: NF11269_low_34
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 7413877 - 7413674
Alignment:
| Q |
8 |
tgtggagttaggatgcttctattgtggatggtatgatctcgttgtatatccaccaaagacactattgcattgtttggtttaacgtttcgtttagcattct |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7413877 |
tgtgcagttaggatgcttctattgtggatggtatgatctcgttgtatatccaccaaagacactattgcattgttt------------cgtttagcattct |
7413790 |
T |
|
| Q |
108 |
cgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggcaacgtcagatgtaccactataacaaacaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7413789 |
cgcatcccaatgcattttttaccaccattttgtgaagttaagaatacaagcttttgctcaaacgcacggcaacgtcagatgtaccactataacaaacaca |
7413690 |
T |
|
| Q |
208 |
ctatgtatgacgtcta |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7413689 |
ctatgtatgacgtcta |
7413674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 8297201 - 8297071
Alignment:
| Q |
73 |
tgcattgtttggtttaacgtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgc |
172 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8297201 |
tgcattgtttggtttagcatttagattagcattctcgtgtcccaatgcctttttgaccaccattttgtgaagctaagaatacaagcttttgctcaaacgc |
8297102 |
T |
|
| Q |
173 |
acggcaacgtcagatgtaccactataacaaa |
203 |
Q |
| |
|
||| | ||||||| | |||||||| |||||| |
|
|
| T |
8297101 |
acgaccacgtcaggtttaccactaaaacaaa |
8297071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 31440695 - 31440828
Alignment:
| Q |
75 |
cattgtttggtttaacgtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcac |
174 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
31440695 |
cattgtttggtttagcgtttaaattagcattctcgcatcccaatgccttttttaccaccattctgtgaagctaagaatacaagtttttgcgcaaccgcac |
31440794 |
T |
|
| Q |
175 |
ggcaacgtcagatgtaccactataacaaacacac |
208 |
Q |
| |
|
||| | |||| | ||||||| ||||||||||| |
|
|
| T |
31440795 |
agcagcatcaggttaaccactaaaacaaacacac |
31440828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 33376331 - 33376233
Alignment:
| Q |
80 |
tttggtttaacgtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggca |
178 |
Q |
| |
|
||||||||||||||| |||||||||| | || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33376331 |
tttggtttaacgtttaaattagcattctggagtctcaatgcctttttgaccaccattttgtgaagctaagaatacaagcttttgctcaaacgcacggca |
33376233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 33684160 - 33684298
Alignment:
| Q |
70 |
tattgcattgtttggtttaacgtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaa |
169 |
Q |
| |
|
|||||||||| |||||||| ||||| | ||| |||| ||| || |||| | ||||| ||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
33684160 |
tattgcattgcttggtttagcgtttagattaacattatcgtgtctcaatacctttttgaccactattttgtgaagttaagaatacaagattttgctcaaa |
33684259 |
T |
|
| Q |
170 |
tgcacggcaacgtcagatgtaccactataacaaacacac |
208 |
Q |
| |
|
||| |||| ||||| | |||||||| ||||||||||| |
|
|
| T |
33684260 |
cgcaaggcagcgtcaagtttaccactaaaacaaacacac |
33684298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University