View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_36 (Length: 236)
Name: NF11269_low_36
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41145627 - 41145408
Alignment:
| Q |
1 |
tttagatcatttgggtctatgttacatatttgaacagctagactgccggccaacatggcaaagagcagtgctcctatcatccactgcgccaaagctttgc |
100 |
Q |
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| T |
41145627 |
tttagatcatttgggtctatgttacatatttgaacagctagactgccggccaacatggcaaagagcagtgctcctatcatccactgcgccaaagctttgc |
41145528 |
T |
|
| Q |
101 |
cctgagaatgtgccatactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatt |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41145527 |
cctgagaatgtgccata--ctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatt |
41145430 |
T |
|
| Q |
201 |
tatagtggtgttaaggatgtta |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41145429 |
tatagtggtgttaaggatgtta |
41145408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 15258921 - 15259031
Alignment:
| Q |
115 |
atactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatttatagtggtgttaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15258921 |
atactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatttatagtggtgtcaa |
15259020 |
T |
|
| Q |
215 |
ggatgttattg |
225 |
Q |
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||||||||||| |
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| T |
15259021 |
ggatgttattg |
15259031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 31142096 - 31141989
Alignment:
| Q |
114 |
catactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatttatagtggtgtta |
213 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
31142096 |
catactctcctaattaattaactaaatgcttagcttactggttctagtttactatatgttttgatgtgttgtctctaagagtttatttatagtggtgtca |
31141997 |
T |
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| Q |
214 |
aggatgtt |
221 |
Q |
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|||||||| |
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| T |
31141996 |
aggatgtt |
31141989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 30231748 - 30231666
Alignment:
| Q |
114 |
catactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30231748 |
catactctcctaattaattaaccaaatgcttagctaactagttctagtttactatatgttttgatgtgttgcctctaagagtt |
30231666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 18747595 - 18747703
Alignment:
| Q |
114 |
catactctcctaattaattaaccaaatgcttagctaactggttctagtttactatatgttttgatgtgttgcctctaagagtttatttatagtggtgtta |
213 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| | |
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| T |
18747595 |
catactctcttaattaattaaccaaatgcttagctaactggttctagtttactata---taacatgtgttgcctctaagagtttatttatattggtgtca |
18747691 |
T |
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| Q |
214 |
aggatgttattg |
225 |
Q |
| |
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|||||||||||| |
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|
| T |
18747692 |
aggatgttattg |
18747703 |
T |
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