View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_38 (Length: 230)
Name: NF11269_low_38
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 2284164 - 2283967
Alignment:
| Q |
18 |
agaagttacctatttctgatcattttcaacaatttacaaatttatcttacgactctacaaaactcagtttgtactccatgtgattcagatgacatttgtt |
117 |
Q |
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| T |
2284164 |
agaagttacctatttttgatcattttcaacaatttacaaatctatctgatgactctacaaaactcagtttgtactccatgtgattcagatgacatttgtt |
2284065 |
T |
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| Q |
118 |
taggttatttgacaataaaagaatagttgtatttttcgataaaaagaacagcctttgcaaaagcttgttgagaacgtcaaactcttctcatttctgtg |
215 |
Q |
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| T |
2284064 |
taggttatttgacaataaaagaatagctgtatttttcgataaaaagaacagcctttgcaaaagcttgttgaaaacgtcaaactcttctcatttctgtg |
2283967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 26416900 - 26416862
Alignment:
| Q |
20 |
aagttacctatttctgatcattttcaacaatttacaaat |
58 |
Q |
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| T |
26416900 |
aagttacctatttctgatcattttaaacaatttacaaat |
26416862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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