View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11269_low_40 (Length: 203)
Name: NF11269_low_40
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11269_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28731763 - 28731567
Alignment:
| Q |
1 |
tctcttgagacttgaaatcttctcccctttcatggaaacctattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgcc |
100 |
Q |
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||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731763 |
tctcttgagacttgaaatcttcttcaccgccatggaaaactcttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgcc |
28731664 |
T |
|
| Q |
101 |
atgctttctggtgacgtcgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
197 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731663 |
atgctttccggtgacgttgtcaccgccactgaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
28731567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 38122159 - 38121993
Alignment:
| Q |
31 |
catggaaacctattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
130 |
Q |
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|||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
38122159 |
catggaaaactcttcaaccttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccact |
38122060 |
T |
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| Q |
131 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
197 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
38122059 |
gaaggaatcgaagcttcattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctc |
38121993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 38607967 - 38608130
Alignment:
| Q |
31 |
catggaaacctattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
130 |
Q |
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|||||||| || |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
38607967 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38608063 |
T |
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| Q |
131 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
197 |
Q |
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||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38608064 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctc |
38608130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 38792750 - 38792913
Alignment:
| Q |
31 |
catggaaacctattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact |
130 |
Q |
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|||||||| || |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
38792750 |
catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact |
38792846 |
T |
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| Q |
131 |
gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
197 |
Q |
| |
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||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38792847 |
gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctc |
38792913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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