View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11269_low_7 (Length: 446)

Name: NF11269_low_7
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11269_low_7
NF11269_low_7
[»] chr3 (17 HSPs)
chr3 (21-278)||(51231143-51231401)
chr3 (284-383)||(49308124-49308223)
chr3 (287-427)||(53467188-53467341)
chr3 (292-380)||(37915410-37915498)
chr3 (284-341)||(49308832-49308889)
chr3 (329-382)||(50704311-50704364)
chr3 (292-383)||(1093175-1093265)
chr3 (292-336)||(50703745-50703789)
chr3 (292-340)||(55336841-55336888)
chr3 (292-323)||(51149164-51149195)
chr3 (292-338)||(18387649-18387694)
chr3 (317-379)||(20111861-20111923)
chr3 (382-416)||(50704264-50704298)
chr3 (287-324)||(55337600-55337637)
chr3 (284-324)||(25080810-25080850)
chr3 (355-383)||(26250201-26250229)
chr3 (382-418)||(37915513-37915549)
[»] chr4 (8 HSPs)
chr4 (292-427)||(51702669-51702817)
chr4 (292-381)||(49648192-49648281)
chr4 (286-420)||(24844081-24844228)
chr4 (284-379)||(33114078-33114176)
chr4 (287-340)||(11380990-11381042)
chr4 (293-382)||(49479909-49479997)
chr4 (382-414)||(33114192-33114224)
chr4 (284-324)||(33352123-33352163)
[»] chr8 (3 HSPs)
chr8 (284-380)||(20105031-20105127)
chr8 (382-427)||(20104971-20105016)
chr8 (284-324)||(37550955-37550995)
[»] scaffold0136 (2 HSPs)
scaffold0136 (288-379)||(23689-23780)
scaffold0136 (382-414)||(23641-23673)
[»] chr7 (9 HSPs)
chr7 (292-383)||(32577328-32577419)
chr7 (284-380)||(12293460-12293556)
chr7 (285-381)||(42745629-42745725)
chr7 (288-383)||(12294229-12294324)
chr7 (286-380)||(9146060-9146154)
chr7 (292-335)||(7831635-7831678)
chr7 (319-383)||(32576627-32576690)
chr7 (382-420)||(32577279-32577317)
chr7 (387-420)||(9146174-9146207)
[»] chr5 (5 HSPs)
chr5 (292-383)||(41609509-41609600)
chr5 (290-383)||(14098382-14098475)
chr5 (293-420)||(210356-210496)
chr5 (285-340)||(29630386-29630440)
chr5 (292-327)||(14098307-14098342)
[»] chr2 (8 HSPs)
chr2 (292-381)||(42847934-42848023)
chr2 (292-382)||(1677572-1677662)
chr2 (292-381)||(42848613-42848702)
chr2 (292-381)||(45632379-45632467)
chr2 (383-427)||(32394910-32394954)
chr2 (382-420)||(1678281-1678319)
chr2 (329-383)||(1678331-1678385)
chr2 (317-383)||(30266349-30266415)
[»] chr1 (4 HSPs)
chr1 (284-340)||(51097509-51097564)
chr1 (287-335)||(36930179-36930227)
chr1 (284-324)||(36681522-36681562)
chr1 (298-335)||(43250883-43250920)
[»] chr6 (1 HSPs)
chr6 (317-377)||(18970615-18970675)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 51231401 - 51231143
Alignment:
Q  21 aagcaactcacatacatgccaaattacaaagcaccttatttctagctagaaccaatgttagttcttaaatccgaatcaatcatttttgacaataagattt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51231401 aagcaactcacatacatgccaaattacaaagcaccttatttctagctagaaccaatgttagttcttaaatccgaatcaatcatttttgacaataagattt 51231302  T
Q  121 atcgtgtagagtgatgttatgggagtggttcttaactatagggaaatgaaatcattatattgtttgttttacgagt-ggtttttagtttgttaaattcta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51231301 atcgtgtagagtgatgttatgggagtggttcttaactatagggaaatgaaatcattatattgtttgttttacgagtgggtttttagtttgttaaattcta 51231202  T
Q  220 ttcatagctgacttggaaaataatagtttgaaaaggataggcctgcatttgtaatttga 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51231201 ttcatagctgacttggaaaataatagtttgaaaaggataggcctgcatttgtaatttga 51231143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 49308124 - 49308223
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  49308124 atagagggcatatcaagtgagaggagtagttataatgagaggatgagaggaattaatttggatcattggatcaaaatcaacgcttcagatttaattgctc 49308223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 53467341 - 53467188
Alignment:
Q  287 gaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc----- 381  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||         
T  53467341 gagggcatatcaagtgggaggagtagttataatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgcttcaaatttaattgctcttt 53467242  T
Q  382 --------tcatgcactacaatctctacctttcatcttctccactctgcctacc 427  Q
            ||||||||||||| |||||||||| |||||||||||||||||||||    
T  53467241 aaaaagggtcatgcactacaacctctaccttttatcttctccactctgcctacc 53467188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 37915410 - 37915498
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattg 380  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  37915410 catatcaagtgagaggagtagttataatgagaggatgagaggaattaatctagaccattggatcaaaatcaacgcttcagatttaattg 37915498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 49308889 - 49308832
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatc 341  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49308889 atagagggcatatcaagtgagaggagtagttataatgagaggatgagaggaattaatc 49308832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 50704364 - 50704311
Alignment:
Q  329 agaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgct 382  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  50704364 agaggaattaatctggaccattggatcaaaatcaacgcttcagatttaattgct 50704311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 1093175 - 1093265
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||||| | || | ||| ||| ||||||||| ||||||| | |||||||    
T  1093175 catatcaagtgagaggagtagttacaatgaga-gatgagaggaattaatttagaccgttggatctaaatcaacgtttcagatgttattgctc 1093265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 50703745 - 50703789
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaat 336  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  50703745 catatcaagtgagaggagtagttaaaatgagaggatgagaggaat 50703789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 55336841 - 55336888
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaat 340  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  55336841 catatcaagtgagaggagtaattataatgaga-gataagaggatttaat 55336888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 323
Target Start/End: Complemental strand, 51149195 - 51149164
Alignment:
Q  292 catatcaagtgagaggagtagttataatgaga 323  Q
    ||||||||||||||||||||||||||||||||    
T  51149195 catatcaagtgagaggagtagttataatgaga 51149164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 18387649 - 18387694
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaatta 338  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  18387649 catatcaaatgagaggagtagttacaatgaga-gataagaggaatta 18387694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 20111923 - 20111861
Alignment:
Q  317 aatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaatt 379  Q
    ||||||||||| |||||||||||| | |||| ||| ||| ||||| |||||||| ||||||||    
T  20111923 aatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaatt 20111861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 50704298 - 50704264
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctcca 416  Q
    ||||||||||||| |||||||||||||||||||||    
T  50704298 tcatgcactacaacctctacctttcatcttctcca 50704264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 55337637 - 55337600
Alignment:
Q  287 gaggacatatcaagtgagaggagtagttataatgagag 324  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  55337637 gagggcatatcaagtgagaggagtaattataatgagag 55337600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 25080810 - 25080850
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagag 324  Q
    ||||||| ||||||||||||||||||| |||||| ||||||    
T  25080810 atagagggcatatcaagtgagaggagttgttatagtgagag 25080850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 26250201 - 26250229
Alignment:
Q  355 caaaatcaacgcttcagatttaattgctc 383  Q
    |||||||||||||||||||||||||||||    
T  26250201 caaaatcaacgcttcagatttaattgctc 26250229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 37915513 - 37915549
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctccact 418  Q
    ||||||||||||| || ||||||||||||||||||||    
T  37915513 tcatgcactacaacctatacctttcatcttctccact 37915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 51702669 - 51702817
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc---------- 381  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||              
T  51702669 catatcaagtgagaggagtagttatgatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgtttcagatttaattgctctttaaaaa 51702768  T
Q  382 ---tcatgcactacaatctctacctttcatcttctccactctgcctacc 427  Q
       ||||||||||||| ||||||||||||||||||||||||||||||||    
T  51702769 gggtcatgcactacaacctctacctttcatcttctccactctgcctacc 51702817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 49648281 - 49648192
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc 381  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||| |||| |||||||||||||||||||||||||    
T  49648281 catatcaagtgagaggagtagttataatgagagggtgagaggaattaatttggaccatttaatctaaatcaacgcttcagatttaattgc 49648192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 24844081 - 24844228
Alignment:
Q  286 agaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc---- 381  Q
    ||||| ||||||||||||||||| ||| || |||||||| || |||| |||||||||| | ||||| |||||||||||||||||||||||||||||        
T  24844081 agagggcatatcaagtgagaggaatagctagaatgagagaatgagagaaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctctt 24844180  T
Q  382 ---------tcatgcactacaatctctacctttcatcttctccactct 420  Q
             ||||||||||||| |||||||||||||||||||||||||    
T  24844181 taaaaagggtcatgcactacaacctctacctttcatcttctccactct 24844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 33114078 - 33114176
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaat---taatctggatcattgaatcaaaatcaacgcttcagatttaatt 379  Q
    ||||||||||||||||||||||||||||  |||||||||||||| | | ||||   |||| | || ||||| |||||||||||||||||||||||||||    
T  33114078 atagaggacatatcaagtgagaggagtaactataatgagaggatgaaaagaattaataatatagaccattggatcaaaatcaacgcttcagatttaatt 33114176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 11381042 - 11380990
Alignment:
Q  287 gaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaat 340  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  11381042 gaggacatatcaagtgagaggagtagttataatgaga-gatgagaggaattaat 11380990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 49479909 - 49479997
Alignment:
Q  293 atatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgct 382  Q
    ||||||||||||||||  ||||||||| |||| || |||  || |||| |  ||||||| ||||||||||||| ||||||||||||||||    
T  49479909 atatcaagtgagaggatgagttataattagag-atgagataaactaatttaaatcattggatcaaaatcaacgtttcagatttaattgct 49479997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 33114192 - 33114224
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctc 414  Q
    ||||||||||||| |||||||||||||||||||    
T  33114192 tcatgcactacaacctctacctttcatcttctc 33114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 33352163 - 33352123
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagag 324  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  33352163 atagaggacatatcaagtgagatgagttgttatagtgagag 33352123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 20105127 - 20105031
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattg 380  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  20105127 atagagggcatatcaagtgagaggactagttataatgagaggatgagaggaattaatctgaatcattggatcaaaatcaacgcttcagatttaattg 20105031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 20105016 - 20104971
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctccactctgcctacc 427  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||    
T  20105016 tcatgcactacaacctctatctttcatcttctccactctgtctacc 20104971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 37550995 - 37550955
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagag 324  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  37550995 atagaggacatatcaagtgagaggagttgttatagtgagag 37550955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 23780 - 23689
Alignment:
Q  288 aggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaatt 379  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  23780 aggacatatcaagtgagagtagtagttataatgagaggatgagaggaattaatatagatcattggatcaaaatcaacgcttcagatttaatt 23689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 23673 - 23641
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctc 414  Q
    ||||||||||||| |||||||||||||||||||    
T  23673 tcatgcactacaacctctacctttcatcttctc 23641  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 32577419 - 32577328
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||    
T  32577419 catatcaagtgagaggagttgttagaatgagaggatgagaggaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctc 32577328  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 12293460 - 12293556
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattg 380  Q
    ||||||| ||||||||||||||||||||  |  ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  12293460 atagagggcatatcaagtgagaggagtaacttaaatgagaggatgagagaaattaatctggatcattggatcaaaatcaacgcttcagatttaattg 12293556  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 42745629 - 42745725
Alignment:
Q  285 tagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc 381  Q
    |||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||| |||| | ||| ||| |||||||||||||||||||||||||    
T  42745629 tagagggcatatcaagtgagagtagtagttataataagaggatgagaggaattaatttggaccgttggatctaaatcaacgcttcagatttaattgc 42745725  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 12294324 - 12294229
Alignment:
Q  288 aggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    |||||||||||||||||||||||| ||  ||||||||||| ||| ||||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  12294324 aggacatatcaagtgagaggagtaatttaaatgagaggatgagatgaattaatctgaaccattggatcaaaatcaacgcttcatatttaattgctc 12294229  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 9146060 - 9146154
Alignment:
Q  286 agaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattg 380  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||   ||| ||||||||||||||||||||||||||||    
T  9146060 agaggccatatcaagtgagaggtgtaattataatgagaggatgagaggaattaatttggacatttggatcaaaatcaacgcttcagatttaattg 9146154  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 7831635 - 7831678
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaa 335  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  7831635 catatcaagtgagaggagtagttataatgagaggatgagaggaa 7831678  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 32576627 - 32576690
Alignment:
Q  319 tgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    ||||||||| ||| ||||||||||||  |||||||| ||||||||||||||| ||||||||||||    
T  32576627 tgagaggatgagaagaattaatctggc-cattgaattaaaatcaacgcttcaaatttaattgctc 32576690  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 32577317 - 32577279
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctccactct 420  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  32577317 tcatgctctacaacctctacctttcatcttctccactct 32577279  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 9146174 - 9146207
Alignment:
Q  387 cactacaatctctacctttcatcttctccactct 420  Q
    |||||||| |||||||||||||||||||||||||    
T  9146174 cactacaacctctacctttcatcttctccactct 9146207  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 41609509 - 41609600
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| || | ||||| |||||||||||||| ||||||||||||||||    
T  41609509 catatcaagtgagaggagtagttataatgagaggatgagaggaattaatttgaaccattggatcaaaatcaacgcatcagatttaattgctc 41609600  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 14098475 - 14098382
Alignment:
Q  290 gacatatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||| |||| ||||| | |||||||||||||||||||||||||||||    
T  14098475 gacatatcaagtgagaggagtagttacaatgagaggatgacaggaattaatttggaccattggaacaaaatcaacgcttcagatttaattgctc 14098382  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 210496 - 210356
Alignment:
Q  293 atatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc----------- 381  Q
    ||||||| |||||| |||||||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||||| ||||||||||||               
T  210496 atatcaaatgagagaagtagttagaatgagaggatgaaaggaattaatctggaccattggatcaaaatcaacgctttagatttaattgctctttaaaaag 210397  T
Q  382 --tcatgcactacaatctctacctttcatcttctccactct 420  Q
      ||||||||||||| |||||||||||||||||||||||||    
T  210396 ggtcatgcactacaacctctacctttcatcttctccactct 210356  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 29630386 - 29630440
Alignment:
Q  285 tagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29630386 tagaggacatatcaagtgagaggagtagttataatgaga-gatgagaggaattaat 29630440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 14098307 - 14098342
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggat 327  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14098307 catatcaagagagaggagtagttataatgagaggat 14098342  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 42847934 - 42848023
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc 381  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||| | |||| ||||| ||| |||||||||||||||||||||||||    
T  42847934 catatcaagtgagaggaatagttataatgagagggtgagaggaattagtttggaccattggatctaaatcaacgcttcagatttaattgc 42848023  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 1677572 - 1677662
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgct 382  Q
    |||||||||||||||||||||||| ||||||||||| | |  |||||||||| |  ||||||| |||||||||||||||||||||||||||    
T  1677572 catatcaagtgagaggagtagttaaaatgagaggatgaaaaaaattaatctgaactattgaattaaaatcaacgcttcagatttaattgct 1677662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 42848702 - 42848613
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc 381  Q
    |||||||| | |||||||||||||||| |||||| | ||| |||||||| |||| | ||||||| |||||||||||||||||||||||||    
T  42848702 catatcaaattagaggagtagttataaggagagggtgagaagaattaatttggaccgttgaatctaaatcaacgcttcagatttaattgc 42848613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 45632467 - 45632379
Alignment:
Q  292 catatcaagtgagaggagtagttataatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgc 381  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||||| |  | | ||| ||| |||||||||||| ||||||||||||    
T  45632467 catatcaagtgagaggagtagttacaatgaga-gatgagaggaattaatttaaaccgttggatctaaatcaacgctttagatttaattgc 45632379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 32394954 - 32394910
Alignment:
Q  383 catgcactacaatctctacctttcatcttctccactctgcctacc 427  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  32394954 catgcactacaacctctacctttcatcttctccactctgcctacc 32394910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 1678319 - 1678281
Alignment:
Q  382 tcatgcactacaatctctacctttcatcttctccactct 420  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  1678319 tcatgcactacaacctctacctttcatcttctccactct 1678281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 1678385 - 1678331
Alignment:
Q  329 agaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    ||||||||||||||| | ||||  |||||||||||||||| | ||||||||||||    
T  1678385 agaggaattaatctgaaccatttgatcaaaatcaacgctttaaatttaattgctc 1678331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 30266349 - 30266415
Alignment:
Q  317 aatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaattgctc 383  Q
    ||||||||| | |||||||||||| | || | ||| ||| |||||||| ||||||||||||||||||    
T  30266349 aatgagagggtgagaggaattaatttagaccgttggatctaaatcaacacttcagatttaattgctc 30266415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 51097509 - 51097564
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagaggataagaggaattaat 340  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  51097509 atagaggacatatcaagtgagaggagtagttataatgaga-gatgagaggaattaat 51097564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 36930227 - 36930179
Alignment:
Q  287 gaggacatatcaagtgagaggagtagttataatgagaggataagaggaa 335  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  36930227 gagggcatatcaagtgagagaagtagttataatgagaggatgagaggaa 36930179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 36681522 - 36681562
Alignment:
Q  284 atagaggacatatcaagtgagaggagtagttataatgagag 324  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  36681522 atagaggacatatcaagtgagaggagttgttatagtgagag 36681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 43250883 - 43250920
Alignment:
Q  298 aagtgagaggagtagttataatgagaggataagaggaa 335  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  43250883 aagtgagaggagtaattataatgagaggatgagaggaa 43250920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 18970675 - 18970615
Alignment:
Q  317 aatgagaggataagaggaattaatctggatcattgaatcaaaatcaacgcttcagatttaa 377  Q
    ||||||||||| |||||||||||| | |||| ||| ||| ||||| |||||||| ||||||    
T  18970675 aatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaa 18970615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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