View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11269_low_9 (Length: 426)

Name: NF11269_low_9
Description: NF11269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11269_low_9
NF11269_low_9
[»] chr4 (21 HSPs)
chr4 (5-398)||(5036023-5036417)
chr4 (209-290)||(12447313-12447394)
chr4 (292-368)||(49210981-49211057)
chr4 (194-368)||(35382457-35382627)
chr4 (211-365)||(23607230-23607380)
chr4 (293-374)||(35144344-35144424)
chr4 (188-368)||(2396162-2396328)
chr4 (334-368)||(39055158-39055192)
chr4 (188-368)||(43968636-43968811)
chr4 (329-374)||(41916075-41916120)
chr4 (235-290)||(28909519-28909574)
chr4 (115-172)||(2528738-2528796)
chr4 (315-361)||(24030602-24030648)
chr4 (5-59)||(29821415-29821469)
chr4 (334-368)||(30865887-30865921)
chr4 (26-67)||(29821361-29821402)
chr4 (313-374)||(39629281-39629342)
chr4 (334-374)||(11346976-11347016)
chr4 (235-290)||(38865148-38865204)
chr4 (332-368)||(44500487-44500523)
chr4 (334-366)||(53779449-53779481)
[»] chr2 (15 HSPs)
chr2 (194-368)||(11921804-11921974)
chr2 (291-374)||(5038664-5038747)
chr2 (188-290)||(30465115-30465218)
chr2 (337-368)||(34820973-34821004)
chr2 (313-368)||(36887663-36887718)
chr2 (26-68)||(1355977-1356019)
chr2 (334-368)||(32887696-32887730)
chr2 (334-368)||(34234880-34234914)
chr2 (310-368)||(44887334-44887392)
chr2 (337-374)||(3668837-3668874)
chr2 (35-68)||(5095806-5095839)
chr2 (210-283)||(34374926-34374999)
chr2 (334-374)||(6459075-6459115)
chr2 (200-284)||(9733382-9733466)
chr2 (24-68)||(18182534-18182578)
[»] chr1 (18 HSPs)
chr1 (187-374)||(36297837-36298019)
chr1 (188-365)||(40287082-40287254)
chr1 (210-374)||(47783741-47783901)
chr1 (249-290)||(32851937-32851978)
chr1 (313-374)||(42831620-42831681)
chr1 (289-368)||(47364281-47364362)
chr1 (313-368)||(38901982-38902037)
chr1 (188-281)||(36166746-36166840)
chr1 (190-363)||(27544228-27544397)
chr1 (316-374)||(28278084-28278142)
chr1 (24-58)||(36774852-36774886)
chr1 (188-277)||(43822648-43822738)
chr1 (334-368)||(52353882-52353916)
chr1 (208-280)||(24555942-24556015)
chr1 (307-368)||(43675291-43675352)
chr1 (334-374)||(32851847-32851887)
chr1 (292-368)||(43822730-43822806)
chr1 (334-374)||(44665404-44665444)
[»] chr8 (24 HSPs)
chr8 (206-374)||(31226557-31226716)
chr8 (188-290)||(5978682-5978785)
chr8 (308-368)||(10954166-10954226)
chr8 (308-368)||(10962171-10962231)
chr8 (260-368)||(23982172-23982274)
chr8 (306-368)||(28540639-28540701)
chr8 (334-368)||(12734039-12734073)
chr8 (293-361)||(1155241-1155310)
chr8 (194-368)||(6519136-6519306)
chr8 (307-368)||(11777761-11777822)
chr8 (307-368)||(28567776-28567837)
chr8 (335-374)||(6427190-6427229)
chr8 (334-368)||(5569224-5569258)
chr8 (194-283)||(28540531-28540621)
chr8 (313-374)||(5139763-5139824)
chr8 (307-368)||(28562278-28562339)
chr8 (307-368)||(28575369-28575430)
chr8 (289-368)||(9134101-9134181)
chr8 (289-368)||(9604596-9604676)
chr8 (334-374)||(14426208-14426248)
chr8 (333-377)||(16531654-16531698)
chr8 (334-374)||(23036790-23036830)
chr8 (334-362)||(36068917-36068945)
chr8 (334-374)||(37673849-37673889)
[»] chr7 (14 HSPs)
chr7 (194-374)||(36901125-36901301)
chr7 (188-368)||(46748121-46748294)
chr7 (289-368)||(23802227-23802306)
chr7 (332-367)||(31330388-31330423)
chr7 (309-368)||(36656702-36656761)
chr7 (334-368)||(4874960-4874994)
chr7 (334-368)||(23156334-23156368)
chr7 (334-368)||(37698484-37698518)
chr7 (334-368)||(44441381-44441415)
chr7 (189-290)||(43302287-43302388)
chr7 (334-374)||(2008585-2008625)
chr7 (334-374)||(6068093-6068133)
chr7 (24-68)||(6980893-6980937)
chr7 (334-374)||(19753049-19753089)
[»] chr3 (15 HSPs)
chr3 (304-374)||(30595169-30595239)
chr3 (334-374)||(19900219-19900259)
chr3 (26-70)||(48342300-48342344)
chr3 (24-68)||(53299810-53299854)
chr3 (211-285)||(35539439-35539514)
chr3 (26-68)||(26960922-26960964)
chr3 (315-368)||(33291080-33291133)
chr3 (194-284)||(30595234-30595325)
chr3 (26-64)||(26960849-26960887)
chr3 (304-366)||(33832036-33832098)
chr3 (334-368)||(36902417-36902451)
chr3 (206-248)||(43584358-43584400)
chr3 (334-368)||(46006171-46006205)
chr3 (317-361)||(36277866-36277910)
chr3 (334-374)||(47075635-47075675)
[»] chr6 (8 HSPs)
chr6 (309-374)||(6988147-6988212)
chr6 (315-368)||(9491849-9491902)
chr6 (291-368)||(32658519-32658596)
chr6 (194-281)||(21941107-21941195)
chr6 (194-281)||(31103582-31103669)
chr6 (5-66)||(28606479-28606543)
chr6 (335-374)||(25099074-25099113)
chr6 (24-68)||(28606553-28606597)
[»] chr5 (14 HSPs)
chr5 (329-368)||(6761462-6761501)
chr5 (334-374)||(1309850-1309890)
chr5 (5-64)||(15477207-15477266)
chr5 (334-374)||(34382560-34382600)
chr5 (334-368)||(7293042-7293076)
chr5 (332-374)||(11200730-11200772)
chr5 (334-368)||(22579669-22579703)
chr5 (194-283)||(4432212-4432301)
chr5 (309-374)||(15468210-15468275)
chr5 (334-374)||(837833-837873)
chr5 (332-368)||(13486578-13486614)
chr5 (320-368)||(26675573-26675621)
chr5 (320-368)||(26947181-26947229)
chr5 (334-374)||(42951820-42951860)
[»] scaffold0991 (1 HSPs)
scaffold0991 (291-374)||(2971-3054)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 398
Target Start/End: Complemental strand, 5036417 - 5036023
Alignment:
Q  5 gagagagaagaaaactattgattttttgtctttttatacatttgtgacattgtggttggccaatatttagcacccaaatgtcacccaaatgctacacgag 104  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||    
T  5036417 gagagagaagaaaactat-gattttttgtctttttatacacttgtgacattgtggttgaccaatgtttgacaccccaatgtcacccaaatgctacccgag 5036319  T
Q  105 aattt--cacatttta----cccttgctttggttaaagggccactgtggcc-taaattattacccgtactaataaaatttaagaaagtggtaagatcatc 197  Q
    |||||  |||||||||    ||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||||||| ||||    
T  5036318 aatttttcacattttatttacccttgctttggttaaagggccactgtgggcgtaaattattacctgtactaataagatttaataaagtggtaagaccatc 5036219  T
Q  198 ttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacccggggtcggggtct 297  Q
    |||||||  ||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||       |||||||    
T  5036218 ttcaatggaagggtcttaaccatttaagacccaatagctattaggtaccccattggggagagtctttttcagagtcttataagacc------gggggtct 5036125  T
Q  298 taattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattatgaaaaatgttaacgaatgttcc 396  Q
    ||||| ||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||  |||||| |||||||||||| ||| ||    
T  5036124 taattaagaccctcaattttaagcgggactctcactcttttaatattaaaaaattgaaatgtaatgatataaagttatgagaaatgttaacgagtgtccc 5036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 12447313 - 12447394
Alignment:
Q  209 ggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacccggggtc 290  Q
    ||||||||||| ||||||| || |||||||||| |||| ||||| ||||| ||||||| || ||||||||||||||||||||    
T  12447313 ggtcttaaccagttaagacccactatctattaggtaccccattgaggagaatcttttttagtgtcttataagacccggggtc 12447394  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 49210981 - 49211057
Alignment:
Q  292 gggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||| || |||||||| ||||||||||||  |||  | |||||||||||||||||||||||||||||||||||    
T  49210981 gggtcttacttaagacctcatttttaagcgggatcctcgctcttttaatattaaaaaattaaaatgtaatgatataa 49211057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 35382627 - 35382457
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtcgg 292  Q
    |||||||| || |||||||||||| ||||||||| || || |||||||  ||| | | |||||| | ||||||||||||||||||||||||      | |    
T  35382627 catcttcattgggagggtcttaactatttaagacccagtaactattaggcacccctaatggggataatctttttcagggtcttataagacc------cag 35382534  T
Q  293 ggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||| ||| || ||| ||||| ||||||||||||| | || | |||||||||| ||||||| |||| |||||||||||    
T  35382533 ggttttacttaagaccctcacttttaagcgggacccacactcttttaatatttaaaaattgaaatataatgatataa 35382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 23607230 - 23607380
Alignment:
Q  211 tcttaaccatttaagacacaatatctattag-atacctc-attggggagagtctttttcagggtcttataagacccggggtcggggtcttaattcagacc 308  Q
    ||||||||||||||||| | ||| ||||||| ||| ||| |||| ||||| ||||||||||||||| |||||||||       | |||||| || |||||    
T  23607230 tcttaaccatttaagacccgatacctattaggatatctccattgtggagaatctttttcagggtctcataagaccc-------gagtcttacttaagacc 23607322  T
Q  309 t-caattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgata 365  Q
    | |||| |||||||||||  ||| | |||||||||| |||||||||||||||| ||||    
T  23607323 tccaatcttaagcgggaccatcactcttttaatattgaaaaattaaaatgtaaagata 23607380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 35144344 - 35144424
Alignment:
Q  293 ggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||| || ||||| |||||||||| ||||| | ||| ||||||||||||||||||| |||||||||| ||||| |||||    
T  35144344 ggtcttatttaagaccccaattttaagtgggacccacat-attttaatattaaaaaattgaaatgtaatggtataaaattat 35144424  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 368
Target Start/End: Original strand, 2396162 - 2396328
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacccggg 287  Q
    ||||| ||||||||||| |||| ||||||||||||||||| |  || |||||||||| | ||||| ||| | |||||||||        |||||||||||    
T  2396162 taagaccatcttcaatgggaggttcttaaccatttaagacccggtacctattagatatcccattgaggataatctttttca--------taagacccggg 2396253  T
Q  288 gtcggggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||      ||| || ||||| || ||||||| ||||| |||| | ||||||||||||||| || ||||||| ||||||||    
T  2396254 gtc------ttacttaagaccccacttttaagagggaccctcaattttttaatattaaaaacttgaaatgtactgatataa 2396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 39055158 - 39055192
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||||||||||||    
T  39055158 ttttaatattaaaaaattaaaatgtaatgatataa 39055192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 368
Target Start/End: Original strand, 43968636 - 43968811
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccgg 286  Q
    ||||| ||||| || || |||||||||||| ||||||||| |   | ||||||| |||| | | ||| |||| ||||||||| |||||||||||| ||||    
T  43968636 taagaccatctccattgggagggtcttaactatttaagacccggaacctattaggtacccccaatggagagaatctttttcacggtcttataagatccgg 43968735  T
Q  287 ggtcggggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||      ||| || ||||  || |||||||| |||| | || | ||||||||||||||||||||||| || ||||||||    
T  43968736 ggtc------ttacttaagactccacttttaagcaggacccacactcttttaatattaaaaaattaaaatatagtgatataa 43968811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 41916120 - 41916075
Alignment:
Q  329 cattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  41916120 cattcttttaatattaaaaaattaaaatataatgatataaaattat 41916075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 28909574 - 28909519
Alignment:
Q  235 ctattagatacctcattggggagagtctttttcagggtcttataagacccggggtc 290  Q
    |||||||||| | || || ||||| |||||||||| ||||||||||||||||||||    
T  28909574 ctattagatatcccaatgaggagaatctttttcagagtcttataagacccggggtc 28909519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 2528796 - 2528738
Alignment:
Q  115 tttacccttgctttggttaaagggccactgt-ggcctaaattattacccgtactaataa 172  Q
    |||| |||||||||||||||||||||||| | |||||||||||||| || || ||||||    
T  2528796 tttagccttgctttggttaaagggccactatgggcctaaattattaaccataataataa 2528738  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 24030602 - 24030648
Alignment:
Q  315 ttaagcgggactctcattattttaatattaaaaaattaaaatgtaat 361  Q
    |||||||||||||  | | ||||||||||||||||||||||||||||    
T  24030602 ttaagcgggactcatacttttttaatattaaaaaattaaaatgtaat 24030648  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 29821415 - 29821469
Alignment:
Q  5 gagagagaagaaaactattgattttttgtctttttatacatttgtgacattgtgg 59  Q
    ||||||||||||||| ||   |||||||||||||| |||| ||||||||||||||    
T  29821415 gagagagaagaaaaccatgatttttttgtctttttgtacacttgtgacattgtgg 29821469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 30865887 - 30865921
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||| ||||||||||||||||    
T  30865887 ttttaatattaaaaaattgaaatgtaatgatataa 30865921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 29821402 - 29821361
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaa 67  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  29821402 ttttttatctttttgtacacttgtgacattgtggttggccaa 29821361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 39629342 - 39629281
Alignment:
Q  313 ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||| |||||| || | |||||||||||||||||| |||  ||||||||||| |||||    
T  39629342 ttttaagcaggactcgcactcttttaatattaaaaaattgaaaaataatgatataaaattat 39629281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 11346976 - 11347016
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  11346976 ttttaatattataaaattaaaatataatgatataaaattat 11347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 38865204 - 38865148
Alignment:
Q  235 ctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtc 290  Q
    ||||||| |||||| | |||||||| ||||||||||||||||| ||||||| |||||    
T  38865204 ctattaggtacctccaatggggagaatctttttcagggtcttacaagacccagggtc 38865148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 44500487 - 44500523
Alignment:
Q  332 tattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||| |||||||||| |||||    
T  44500487 tattttaatattaaaaaattgaaatgtaatgttataa 44500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 53779481 - 53779449
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatat 366  Q
    ||||||||||||||||||||||| |||||||||    
T  53779481 ttttaatattaaaaaattaaaatataatgatat 53779449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 368
Target Start/End: Original strand, 11921804 - 11921974
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtcgg 292  Q
    ||||| ||||| ||||||||||| |||||||||| | ||| ||||||| |||||| ||||||||||  |||||| ||||||||||||||||      |||    
T  11921804 catctccaatgggagggtcttaaacatttaagacccgatacctattaggtacctccattggggagaaacttttttagggtcttataagacc------cgg 11921897  T
Q  293 ggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| || ||| || |||| ||||||||||||| ||   ||||||||||||||||||| ||| |||||||||||    
T  11921898 ggtcttacttaagacccccaatcttaagcgggactcacacacttttaatattaaaaaattagaatctaatgatataa 11921974  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 5038664 - 5038747
Alignment:
Q  291 ggggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||| | || ||| |||||| ||||||||||| | || ||||||||||||||||||||||||| |||| |||||| |||||    
T  5038664 ggggtctcacttaagatctcaatcttaagcgggacacacaatattttaatattaaaaaattaaaatataataatataaaattat 5038747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 30465115 - 30465218
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacct-cattggggagagtctttttcagggtcttataagacccgg 286  Q
    ||||| ||||||||||  || ||||||||| ||||||||| || ||| |||||| || || ||||| ||||| ||||||||| ||| ||||||||||||     
T  30465115 taagaccatcttcaattggaaggtcttaactatttaagactcagtatttattaggtatcttcattgtggagaatctttttcaaggttttataagacccga 30465214  T
Q  287 ggtc 290  Q
    ||||    
T  30465215 ggtc 30465218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 368
Target Start/End: Complemental strand, 34821004 - 34820973
Alignment:
Q  337 taatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||||||||||||||||||||||||    
T  34821004 taatattaaaaaattaaaatgtaatgatataa 34820973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Complemental strand, 36887718 - 36887663
Alignment:
Q  313 ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||| |||||| |||| | |||||||||||||||||| ||||| ||||||||||    
T  36887718 ttttaaacgggaccctcactcttttaatattaaaaaattgaaatgcaatgatataa 36887663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 1355977 - 1356019
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    ||||||||| |||| |||| |||||||||||||||||||||||    
T  1355977 ttttttgtcattttgtacacttgtgacattgtggttggccaat 1356019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 32887730 - 32887696
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||||| ||||||    
T  32887730 ttttaatattaaaaaattaaaatgtaataatataa 32887696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 34234880 - 34234914
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||| ||||||||||||||||    
T  34234880 ttttaatattaaaaaattgaaatgtaatgatataa 34234914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 44887392 - 44887334
Alignment:
Q  310 caattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||| ||| ||  ||| |||||||||||||||||| |||| |||||||||||    
T  44887392 caattttaagcaggattcaaattcttttaatattaaaaaattgaaatataatgatataa 44887334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 3668837 - 3668874
Alignment:
Q  337 taatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  3668837 taatattaaaaaattaaaacgtaatgatataaaattat 3668874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 5095806 - 5095839
Alignment:
Q  35 tttttatacatttgtgacattgtggttggccaat 68  Q
    ||||| ||||||||||||||||||||||||||||    
T  5095806 tttttgtacatttgtgacattgtggttggccaat 5095839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 34374926 - 34374999
Alignment:
Q  210 gtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacc 283  Q
    |||||||||||||||||  |  || ||||||| |||| |  |||| ||| ||||||||||||||||||||||||    
T  34374926 gtcttaaccatttaagattcggtacctattaggtacccccatgggaagaatctttttcagggtcttataagacc 34374999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 6459075 - 6459115
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||||||||||||| |||||||| || |||||    
T  6459075 ttttaatattaaaaaattaaaatataatgatagaaaattat 6459115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 9733382 - 9733466
Alignment:
Q  200 caatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagaccc 284  Q
    ||||| ||| || ||||||||||||||  || || ||||||  ||||  || ||||||| || ||||||||||||||||||||||    
T  9733382 caatgggagagttttaaccatttaagaatcagtacctattacgtaccctataggggagaatcgttttcagggtcttataagaccc 9733466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 18182578 - 18182534
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||    
T  18182578 gattttttgttttttggtacacttgtgacattgtggttggccaat 18182534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 374
Target Start/End: Original strand, 36297837 - 36298019
Alignment:
Q  187 gtaagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccg 285  Q
    |||||||||||| |||| | ||||||||||| |||||| |  |  |||||||||| |||||| |||||||||||| |||||||||||||  |||||||      
T  36297837 gtaagatcatctccaataaaagggtcttaactatttaaaatccggtatctattaggtacctccattggggagagtatttttcagggtctcctaagacc-- 36297934  T
Q  286 gggtcggggtcttaattcagacctcaa-ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
         | ||| ||| || ||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||| |||||    
T  36297935 -----gaggttttacttaagacctccacttttaagcgagaccctcactattttaatattaaaaaattgaaatgtaatgatataaaattat 36298019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 40287254 - 40287082
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacccggg 287  Q
    ||||| ||||||||| |  || ||||||| |||||||||| |  ||  |||||| || ||||| ||||||| | ||||||||||||||||||||||        
T  40287254 taagaccatcttcaacggaagagtcttaaacatttaagacccggtacgtattaggtatctcatcggggagaatatttttcagggtcttataagacc---- 40287159  T
Q  288 gtcggggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgata 365  Q
      ||| |||||| || ||| || ||| |||||||||||| | ||   ||||||||||||||||||||||||||||||||    
T  40287158 --cggagtcttacttaagacccacaactttaagcgggacccacacctttttaatattaaaaaattaaaatgtaatgata 40287082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 374
Target Start/End: Complemental strand, 47783901 - 47783741
Alignment:
Q  210 gtcttaaccatttaagacacaatatctatta-gatacctcattggggagagtctttttcagggtcttataagacccggggtcggggtcttaattcagacc 308  Q
    |||||||| ||||||||| || || |||||| ||  || || |||||| | |||||||||||||||||||||||||||||||      ||| || |||||    
T  47783901 gtcttaactatttaagacccagtacctattaagaacccccaatggggaaaatctttttcagggtcttataagacccggggtc------ttacttaagacc 47783808  T
Q  309 tcaa-ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
     | | ||||||||||||||| || | | |||||||||||||||| |||| ||||||||||| |||||    
T  47783807 cccacttttaagcgggactcacactctattaatattaaaaaattgaaatataatgatataaaattat 47783741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 32851978 - 32851937
Alignment:
Q  249 attggggagagtctttttcagggtcttataagacccggggtc 290  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  32851978 attggggagaatctttttcagggtcttataagacccggggtc 32851937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 42831620 - 42831681
Alignment:
Q  313 ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||| | ||   ||||||||||||||||||||||||||||||||||| |||||    
T  42831620 ttttaagcgggacccgcacacttttaatattaaaaaattaaaatgtaatgatataaaattat 42831681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 47364281 - 47364362
Alignment:
Q  289 tcggggtcttaattcagac-ctcaattttaagcgggactctcattattttaatattaaaa-aattaaaatgtaatgatataa 368  Q
    ||||||||||| || |||| | |||||||||| |||| || || |||||||||||||||| |||||||||||||||||||||    
T  47364281 tcggggtcttatttaagactcccaattttaagtgggattcacactattttaatattaaaacaattaaaatgtaatgatataa 47364362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 38901982 - 38902037
Alignment:
Q  313 ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||  | | ||||||||||||||||||||||| |||||||||||    
T  38901982 ttttaagcgggactcgtactcttttaatattaaaaaattaaaatataatgatataa 38902037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 36166746 - 36166840
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacct-cattggggagagtctttttcagggtcttataaga 281  Q
    ||||| |||||| |||||||||||||||| |||||||||| |  || ||||||| ||||| ||||||||  | | ||||||| ||||||||||||    
T  36166746 taagaccatctttaatgagagggtcttaaacatttaagactcggtacctattaggtacctccattggggtcaatttttttcaaggtcttataaga 36166840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 363
Target Start/End: Original strand, 27544228 - 27544397
Alignment:
Q  190 agatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagata-cctcattggggagagtctttttcagggtcttataagacccgggg 288  Q
    ||||||||| ||||| || ||||| |  |||||||||| | ||||||||||| || || |||| ||||||  |||||||| ||| |||||||||          
T  27544228 agatcatctccaatgggatggtctaagacatttaagacccgatatctattaggtacccccatttgggagaaactttttcaaggttttataagac------ 27544321  T
Q  289 tcggggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatga 363  Q
    ||||||||||| || ||| || |||| ||||| ||||| | || | ||||||||||||||| || |||||||||||    
T  27544322 tcggggtcttatttaagacccccaatcttaagtgggacccacactcttttaatattaaaaagttgaaatgtaatga 27544397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 28278084 - 28278142
Alignment:
Q  316 taagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||| || ||||||||||||||||| || ||||| |||| ||||| |||||    
T  28278084 taagcgggactcacactattttaatattaaaaatttgaaatgcaatgctataaaattat 28278142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 36774886 - 36774852
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtg 58  Q
    ||||||||||||||||||||| |||||||||||||    
T  36774886 gattttttgtctttttatacacttgtgacattgtg 36774852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 43822648 - 43822738
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttat 277  Q
    ||||| ||||| |||||  |||||||||  |||||||||| |  || ||||||| |||| | |||||||||| ||||||||||||||||||    
T  43822648 taagaccatctccaatggaagggtcttagacatttaagacccggtacctattaggtacccccattggggagaatctttttcagggtcttat 43822738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 52353916 - 52353882
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||| ||||||||||||||||    
T  52353916 ttttaatattaaaaaattgaaatgtaatgatataa 52353882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 24556015 - 24555942
Alignment:
Q  208 gggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataag 280  Q
    |||||||||| ||||||||| |  || ||||||| |||| | | |||||||| |||||||||||||||||||||    
T  24556015 gggtcttaactatttaagacccgttacctattaggtacccctaatggggagaatctttttcagggtcttataag 24555942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 43675352 - 43675291
Alignment:
Q  307 cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||||| || |||| |||| |||||||||| ||||||| | ||| ||||||||||    
T  43675352 cctcaattttaagtggaactcgcatttttttaatattgaaaaattgatatgcaatgatataa 43675291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 32851887 - 32851847
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  32851887 ttttaatattaaaaaattgaaatgtagtgatataaaattat 32851847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 43822730 - 43822806
Alignment:
Q  292 gggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||| || ||||| ||| ||||| ||||||   || | |||||||||||||||||| ||||||| ||||||||    
T  43822730 gggtcttatttaagaccccaactttaaacgggacctacactcttttaatattaaaaaattgaaatgtagtgatataa 43822806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 44665444 - 44665404
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| |||| ||||||||||| |||||    
T  44665444 ttttaatattaaaaaattgaaatataatgatataaaattat 44665404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 374
Target Start/End: Complemental strand, 31226716 - 31226557
Alignment:
Q  206 gagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtcggggtcttaattca 304  Q
    |||||||||||| ||||||||| || || |||||||||||||| | |||||||| ||||||| |||||||||||||||  |||||           || |    
T  31226716 gagggtcttaactatttaagacccagtacctattagatacctcaaatggggagaatcttttttagggtcttataagacttggggt-----------ttaa 31226628  T
Q  305 gacct-caattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||| || ||||||||||||| | || | |||||||||||||||||| |||| ||||||||||| |||||    
T  31226627 gacctccacttttaagcgggacccgcactcttttaatattaaaaaattgaaatataatgatataaaattat 31226557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 5978785 - 5978682
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacc-tcattggggagagtctttttcagggtcttataagacccgg 286  Q
    ||||| ||||| || ||||||||||||||| |||||||||    || ||||||| |||| ||| |||||||| ||||||||||||||||||||||| |||    
T  5978785 taagaccatctccattgagagggtcttaactatttaagacctggtacctattaggtaccctcaatggggagaatctttttcagggtcttataagactcgg 5978686  T
Q  287 ggtc 290  Q
    ||||    
T  5978685 ggtc 5978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 10954226 - 10954166
Alignment:
Q  308 ctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||| |||||||||| || | |||||||||||||||||| ||||||||||||||||    
T  10954226 ctcaatttttagcgggactcgcaatcttttaatattaaaaaattgaaatgtaatgatataa 10954166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 10962231 - 10962171
Alignment:
Q  308 ctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||| |||||||||| || | |||||||||||||||||| ||||||||||||||||    
T  10962231 ctcaatttttagcgggactcgcaatcttttaatattaaaaaattgaaatgtaatgatataa 10962171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 23982172 - 23982274
Alignment:
Q  260 tctttttcagggtcttataagacccggggtcggggtcttaattcagacc-tcaattttaagcgggactctcattattttaatattaaaaaattaaaatgt 358  Q
    |||||||||||||||||||||||||||||||      ||| || ||||| ||| ||||||||||||| | || | |||||||||||||||||| |||| |    
T  23982172 tctttttcagggtcttataagacccggggtc------ttacttaagaccctcacttttaagcgggac-cacacttttttaatattaaaaaattgaaatat 23982264  T
Q  359 aatgatataa 368  Q
    ||||||||||    
T  23982265 aatgatataa 23982274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 28540639 - 28540701
Alignment:
Q  306 acctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||| ||| ||||||||| || | |||||||||||||||||| ||||||||||||||||    
T  28540639 acctcaatcttatgcgggactcacactcttttaatattaaaaaattgaaatgtaatgatataa 28540701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 12734039 - 12734073
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||||||||||||    
T  12734039 ttttaatattaaaaaattaaaatgtaatgatataa 12734073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 1155310 - 1155241
Alignment:
Q  293 ggtcttaattcagacctc-aattttaagcgggactctcattattttaatattaaaaaattaaaatgtaat 361  Q
    ||||||| || ||||||| ||| ||||||||||||| || | |||||||||||||||||| |||||||||    
T  1155310 ggtcttacttaagacctccaatcttaagcgggactcacactcttttaatattaaaaaattgaaatgtaat 1155241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 6519306 - 6519136
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtcgg 292  Q
    ||||| ||||| ||| |||||||||||||||||| |  || |||||||  ||||| |||| ||||| | ||||||| |||||| ||| ||      ||||    
T  6519306 catctccaatgggagagtcttaaccatttaagacccggtacctattaggcacctccattgaggagaatttttttcaaggtcttgtaatac------tcgg 6519213  T
Q  293 ggtcttaattcagacctcaa-ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| || |||||||   ||||||||||||  | || | ||||| |||||||||||| ||||||||||||||||    
T  6519212 ggtcttacttaagacctccgcttttaagcgggatccgcactcttttagtattaaaaaattgaaatgtaatgatataa 6519136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 11777822 - 11777761
Alignment:
Q  307 cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| |||| |||||||| || | ||||||||||||||| || ||||||||||||||||    
T  11777822 cctcaatcttaaacgggactcgcactcttttaatattaaaaagttgaaatgtaatgatataa 11777761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 28567776 - 28567837
Alignment:
Q  307 cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| ||||||||||| | |  |||||||||||||||||||| |||| |||||||||||    
T  28567776 cctcaatcttaagcgggacccactctattttaatattaaaaaattgaaatataatgatataa 28567837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 6427229 - 6427190
Alignment:
Q  335 tttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  6427229 tttaatattaaaaaattaaaatataatgatataaaattat 6427190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 5569224 - 5569258
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||| ||||||||||||||||    
T  5569224 ttttaatattaaaaaattcaaatgtaatgatataa 5569258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 28540531 - 28540621
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacc-tcattggggagagtctttttcagggtcttataagacc 283  Q
    ||||| ||||| ||||||||| | ||||||||||   ||| ||||||| |||| ||||||||||||   |||||| |||||||||||||||    
T  28540531 catctacaatgggagggtcttcaacatttaagacctgatacctattagttaccctcattggggagaagttttttcggggtcttataagacc 28540621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 5139824 - 5139763
Alignment:
Q  313 ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||   || | ||||||||||||||||| ||||| ||||||||||| |||||    
T  5139824 ttttaagcgggaccagcactcttttaatattaaaaaatgaaaatataatgatataaaattat 5139763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 28562278 - 28562339
Alignment:
Q  307 cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| ||||||||||| | |  |||||||||||||||||||| |||| |||| ||||||    
T  28562278 cctcaatcttaagcgggacccactctattttaatattaaaaaattgaaatataataatataa 28562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 28575369 - 28575430
Alignment:
Q  307 cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||| ||||||||||| | |  | |||||||||||||||||| |||| |||||||||||    
T  28575369 cctcaatcttaagcgggacccactctcttttaatattaaaaaattgaaatataatgatataa 28575430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 9134101 - 9134181
Alignment:
Q  289 tcggggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||| || ||| ||||  ||||||||||||  | || | |||||||||||||||||| |||| |||||||||||    
T  9134101 tcggggtcttacttaagatcctcccttttaagcgggatccgcactcttttaatattaaaaaattgaaatataatgatataa 9134181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 9604676 - 9604596
Alignment:
Q  289 tcggggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||| || ||| || || ||||||||||||  |||| | ||||||| |||||||||| |||| |||||||||||    
T  9604676 tcggggtcttatttaagatccccatttttaagcgggatcctcactcttttaatgttaaaaaattgaaatctaatgatataa 9604596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 14426248 - 14426208
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  14426248 ttttaatattaaaaaattaaaattaaatgatataaaattat 14426208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 16531698 - 16531654
Alignment:
Q  333 attttaatattaaaaaattaaaatgtaatgatataacattatgaa 377  Q
    ||||||||||||||||||| |||| |||||||||||  |||||||    
T  16531698 attttaatattaaaaaattgaaatataatgatataaagttatgaa 16531654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 23036790 - 23036830
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  23036790 ttttaatattaaaaaattgatatgtaatgatataaaattat 23036830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 36068945 - 36068917
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatg 362  Q
    |||||||||||||||||||||||||||||    
T  36068945 ttttaatattaaaaaattaaaatgtaatg 36068917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 37673889 - 37673849
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  37673889 ttttaatattaaaaaattagaatgtagtgatataaaattat 37673849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 36901301 - 36901125
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccggggtcgg 292  Q
    ||||||||||| ||| ||||||||||||||||||    || || |||| |||||| || ||||| | |||||||||||||||||||||| || | |||      
T  36901301 catcttcaatgggagagtcttaaccatttaagacttcgtaccttttaggtacctccatcggggataatctttttcagggtcttataagatccagagtc-- 36901204  T
Q  293 ggtcttaattcagacctcaa-ttttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
        ||| || ||||||| | |||||||| || | || ||| ||||||||||||||||||||||| ||||||||||| |||||    
T  36901203 ----ttatttaagacctccacttttaagctgggcccttattcttttaatattaaaaaattaaaatataatgatataaaattat 36901125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 368
Target Start/End: Complemental strand, 46748294 - 46748121
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatac-ctcattggggagagtctttttcagggtcttataagacccgg 286  Q
    ||||||||||||||||| |||| |||||||||||||||||    |||||||||| ||| | ||||||||||| |||| |||||||   ||||||||        
T  46748294 taagatcatcttcaatgggaggatcttaaccatttaagacctggtatctattaggtactcccattggggagaatcttcttcaggg---tataagac---- 46748202  T
Q  287 ggtcggggtcttaattcaga-cctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
      ||| ||||||| || ||| || || ||||||||||||| | || | ||||||||||||| |||| | ||||||||||||||    
T  46748201 --tcgaggtcttagttaagacccccacttttaagcgggacccacactcttttaatattaaataattgatatgtaatgatataa 46748121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 23802306 - 23802227
Alignment:
Q  289 tcggggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||| || |||||||||| |||||| ||| || || | ||| |||||||||||||| ||||||||||||||||    
T  23802306 tcggggtcttacttaagacctcaatcttaagcaggattcacactctttcaatattaaaaaattgaaatgtaatgatataa 23802227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 367
Target Start/End: Original strand, 31330388 - 31330423
Alignment:
Q  332 tattttaatattaaaaaattaaaatgtaatgatata 367  Q
    |||||||||||||||||||| |||||||||||||||    
T  31330388 tattttaatattaaaaaattgaaatgtaatgatata 31330423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 36656761 - 36656702
Alignment:
Q  309 tcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||||||||| | ||   |||||||||||||||||| | ||||||||||||||    
T  36656761 tcaattttaagcgggacccacacctttttaatattaaaaaattgatatgtaatgatataa 36656702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 4874994 - 4874960
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||| ||||||||||||||||||||||||    
T  4874994 ttttaatatttaaaaattaaaatgtaatgatataa 4874960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 23156368 - 23156334
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||| ||||||||    
T  23156368 ttttaatattaaaaaattaaaatgtagtgatataa 23156334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 37698484 - 37698518
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||| ||||||||    
T  37698484 ttttaatattaaaaaattaaaatgtagtgatataa 37698518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 44441415 - 44441381
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||| ||||||||    
T  44441415 ttttaatattaaaaaattaaaatgtagtgatataa 44441381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 43302388 - 43302287
Alignment:
Q  189 aagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacccgggg 288  Q
    |||| |||||||| || |||| ||||||| |||||||||  | || ||||||| ||||||   |||||||   ||||||| |||||||||||||| ||||    
T  43302388 aagaccatcttcattgggaggatcttaactatttaagacctagtaactattaggtacctccaaggggagaacttttttcaaggtcttataagacctgggg 43302289  T
Q  289 tc 290  Q
    ||    
T  43302288 tc 43302287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 2008585 - 2008625
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| |||||||||| ||||| |||||    
T  2008585 ttttaatattaaaaaattgaaatgtaatggtataaaattat 2008625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 6068093 - 6068133
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  6068093 ttttaatattaaaaaattgaaatgtaatgatagaaaattat 6068133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 6980937 - 6980893
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||| | ||| |||| |||||||||||||||||||||||    
T  6980937 gattttttgtttgtttgtacacttgtgacattgtggttggccaat 6980893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 19753089 - 19753049
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  19753089 ttttaagattaaaaaattgaaatgtaatgatataaaattat 19753049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 30595239 - 30595169
Alignment:
Q  304 agacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||| || |||||||||||||  ||||| ||||| |||||||||||| |||||||||||||||| |||||    
T  30595239 agaccccacttttaagcgggaccttcattcttttagtattaaaaaatttaaatgtaatgatataaaattat 30595169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 19900259 - 19900219
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  19900259 ttttaatattaaaaaattaaaatgtaatgatataaaattat 19900219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 48342300 - 48342344
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaatat 70  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  48342300 ttttttgtttttttgtacatttgtgacattgtggttggccaatat 48342344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 53299810 - 53299854
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  53299810 gattttttgtctttttgtacacttgtgacattgtggttggccaat 53299854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 35539439 - 35539514
Alignment:
Q  211 tcttaaccatttaagacacaatatctattagatacctc-attggggagagtctttttcagggtcttataagacccg 285  Q
    ||||||||||||||||| |  |||||||||| |||||| | ||  |||| ||||||||||||||||||||||||||    
T  35539439 tcttaaccatttaagacccggtatctattaggtacctccaatgtagagaatctttttcagggtcttataagacccg 35539514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 26960922 - 26960964
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  26960922 ttttttgtctttttctacacttgtgacattgtggttggccaat 26960964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 33291133 - 33291080
Alignment:
Q  315 ttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||| | || ||||||||||| ||||| |||||||||||||||||||    
T  33291133 ttaagcgggacccacactattttaatataaaaaagttaaaatgtaatgatataa 33291080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 30595325 - 30595234
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagata-cctcattggggagagtctttttcagggtcttataagaccc 284  Q
    ||||| ||||| ||||||||||||||||||||||    || ||||||| || || ||||| ||||| ||||||| ||| |||||||||||||    
T  30595325 catctccaatgtgagggtcttaaccatttaagaccttgtacctattaggtacccccattgaggagaatcttttttaggatcttataagaccc 30595234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 26960887 - 26960849
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggc 64  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  26960887 ttttttgtctttttgtacacttgtgacattgtggttggc 26960849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 33832098 - 33832036
Alignment:
Q  304 agacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatat 366  Q
    |||||||||||||||| |||   | |||  ||||||||||||||||||||| |||||||||||    
T  33832098 agacctcaattttaagtgggttccacatgtttttaatattaaaaaattaaattgtaatgatat 33832036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 36902451 - 36902417
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||||||||||||||| |||||||||||    
T  36902451 ttttaatattaaaaaattaaaatataatgatataa 36902417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 43584358 - 43584400
Alignment:
Q  206 gagggtcttaaccatttaagacacaatatctattagatacctc 248  Q
    |||||||| || |||||||||||||||||||||||| ||||||    
T  43584358 gagggtctcaaacatttaagacacaatatctattaggtacctc 43584400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 46006205 - 46006171
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||||||||||||||||| |||||||||||    
T  46006205 ttttaatattaaaaaattaaaatataatgatataa 46006171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 36277910 - 36277866
Alignment:
Q  317 aagcgggactctcattattttaatattaaaaaattaaaatgtaat 361  Q
    ||||||||||| || | |||||||||||||||||| |||||||||    
T  36277910 aagcgggactcgcactcttttaatattaaaaaattgaaatgtaat 36277866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 47075675 - 47075635
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  47075675 ttttaatattaaaaaattgatatgtaatgatataaaattat 47075635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 6988147 - 6988212
Alignment:
Q  309 tcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||| ||||||| | || | ||||||||||||||||||||||||| ||||||||| |||||    
T  6988147 tcaattttaggcgggacacacactcttttaatattaaaaaattaaaatgtgatgatataaaattat 6988212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 9491902 - 9491849
Alignment:
Q  315 ttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||||||||||    
T  9491902 ttaagtgggacccacatttttttaatattaaaaaattaaaatgtaatgatataa 9491849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 32658596 - 32658519
Alignment:
Q  291 ggggtcttaattcagacctcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    ||||||||| |||||||  || ||||||||||||| | || | ||||||||||||||||||||||| || ||||||||    
T  32658596 ggggtcttacttcagactccacttttaagcgggacccacactcttttaatattaaaaaattaaaatatactgatataa 32658519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 21941195 - 21941107
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacct-cattggggagagtctttttcagggtcttataaga 281  Q
    ||||| ||||| ||||||||||| ||||||||||   |||| |||||| ||||| |||||| |||| | ||||||||||||||||||||    
T  21941195 catctccaatgggagggtcttaaacatttaagacctgatatttattaggtacctccattggtgagaatttttttcagggtcttataaga 21941107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 31103669 - 31103582
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataaga 281  Q
    |||||||||||  ||||||||||||||||||||| |  |||||||||| ||| | ||||| |||| ||||||| |  |||||||||||    
T  31103669 catcttcaatggaagggtcttaaccatttaagacccgttatctattaggtactttattggagagaatcttttttaaagtcttataaga 31103582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 28606543 - 28606479
Alignment:
Q  5 gagagagaagaaaactat---tgattttttgtctttttatacatttgtgacattgtggttggcca 66  Q
    ||||||||||||||||||   |  |||||||||||||| |||| |||||||||||||||||||||    
T  28606543 gagagagaagaaaactatgattttttttttgtctttttgtacacttgtgacattgtggttggcca 28606479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 25099074 - 25099113
Alignment:
Q  335 tttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  25099074 tttaatattaaaaaattaaaatataatgatataaaattat 25099113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 28606553 - 28606597
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||||| |||| ||  |||||||||||||||||||    
T  28606553 gattttttgtctttttgtacacttaagacattgtggttggccaat 28606597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 6761501 - 6761462
Alignment:
Q  329 cattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  6761501 catttttttaatattaaaaaattaaaatgtaatgatataa 6761462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 1309890 - 1309850
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  1309890 ttttaatattaaaaaattaaaatataatgatataaaattat 1309850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 15477266 - 15477207
Alignment:
Q  5 gagagagaagaaaactattgattttt-tgtctttttatacatttgtgacattgtggttggc 64  Q
    |||||||||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||    
T  15477266 gagagagaagaaaactat-gatttttatatctttttgtacatttgtgacattgtagttggc 15477207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 34382600 - 34382560
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  34382600 ttttaatattaaaatattaaaatgtaatgatataaaattat 34382560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 7293042 - 7293076
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||| ||||||||||||||||    
T  7293042 ttttaatattaaaaaattgaaatgtaatgatataa 7293076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 11200730 - 11200772
Alignment:
Q  332 tattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||||||| ||||||| |||||| |||||    
T  11200730 tattttaatattaaaaaattaatatgtaataatataaaattat 11200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 22579669 - 22579703
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||||||||||| ||||||    
T  22579669 ttttaatattaaaaaattaaaatgtaattatataa 22579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 4432212 - 4432301
Alignment:
Q  194 catcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctcattggggagagtctttttcagggtcttataagacc 283  Q
    ||||| ||||| || | ||||||||||||||||| |  || ||||||| |||| | |||| |||| ||||||| | ||||||||||||||    
T  4432212 catctccaatgggatgatcttaaccatttaagactcggtacctattaggtaccccgttggagagaatctttttaaaggtcttataagacc 4432301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 15468275 - 15468210
Alignment:
Q  309 tcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||| |||||||| || | || | |||||||||||||||||| |||| ||||||||||| |||||    
T  15468275 tcaatcttaagcggtacccacactcttttaatattaaaaaattgaaatttaatgatataaaattat 15468210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 837873 - 837833
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  837873 ttttaatattaaaatattgaaatgtaatgatataaaattat 837833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 13486578 - 13486614
Alignment:
Q  332 tattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||||||||||||||| |||| |||||||||||    
T  13486578 tattttaatattaaaaaattgaaatataatgatataa 13486614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 26675621 - 26675573
Alignment:
Q  320 cgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||| |||| |||||||||||||||||| || ||| |||||||||    
T  26675621 cgggactcgcattcttttaatattaaaaaattgaagtgtgatgatataa 26675573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 26947229 - 26947181
Alignment:
Q  320 cgggactctcattattttaatattaaaaaattaaaatgtaatgatataa 368  Q
    |||||||| |||| |||||||||||||||||| || ||| |||||||||    
T  26947229 cgggactcgcattcttttaatattaaaaaattgaagtgtgatgatataa 26947181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 42951860 - 42951820
Alignment:
Q  334 ttttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  42951860 ttttaatattaaaaaattgaaatgtagtgatataaaattat 42951820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 3054 - 2971
Alignment:
Q  291 ggggtcttaattcagacc-tcaattttaagcgggactctcattattttaatattaaaaaattaaaatgtaatgatataacattat 374  Q
    ||||||||| || ||||| ||||| |||||||||||||  ||| ||||| |||||||||||| |||| ||||||||||| |||||    
T  3054 ggggtcttacttaagaccctcaatcttaagcgggactcatattttttta-tattaaaaaattgaaatataatgatataaaattat 2971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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