View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_102 (Length: 311)

Name: NF1126_high_102
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_102
NF1126_high_102
[»] chr3 (24 HSPs)
chr3 (87-300)||(2476866-2477079)
chr3 (87-296)||(754216-754424)
chr3 (87-296)||(9565436-9565644)
chr3 (87-300)||(2635953-2636167)
chr3 (90-289)||(2631600-2631804)
chr3 (90-215)||(767880-768005)
chr3 (87-294)||(7324037-7324244)
chr3 (87-214)||(9594213-9594340)
chr3 (128-300)||(7442627-7442796)
chr3 (87-283)||(7318519-7318715)
chr3 (227-300)||(2644102-2644175)
chr3 (140-299)||(2492333-2492491)
chr3 (149-297)||(7333927-7334073)
chr3 (121-289)||(2658787-2658954)
chr3 (91-157)||(7442560-7442626)
chr3 (227-288)||(2502446-2502507)
chr3 (227-293)||(9561731-9561797)
chr3 (150-215)||(666829-666894)
chr3 (87-141)||(2643970-2644025)
chr3 (88-182)||(13498563-13498658)
chr3 (87-144)||(7423865-7423923)
chr3 (133-177)||(1438366-1438410)
chr3 (261-289)||(9586959-9586987)
chr3 (227-290)||(9608074-9608138)
[»] scaffold0097 (1 HSPs)
scaffold0097 (159-267)||(34231-34336)
[»] chr5 (4 HSPs)
chr5 (227-294)||(20301675-20301743)
chr5 (227-294)||(20306088-20306156)
chr5 (227-294)||(20310492-20310560)
chr5 (258-294)||(20293228-20293264)
[»] scaffold0044 (1 HSPs)
scaffold0044 (262-294)||(89384-89416)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 2477079 - 2476866
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaag 186  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2477079 atcaacaactcaaactaaccaaactattgaaaataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaataaccaag 2476980  T
Q  187 actcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgta 286  Q
    ||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2476979 actcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgta 2476880  T
Q  287 gacatttgagtata 300  Q
    ||||||||||||||    
T  2476879 gacatttgagtata 2476866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 87 - 296
Target Start/End: Original strand, 754216 - 754424
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaag 186  Q
    |||||||||||||| |||||| ||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  754216 atcaacaactcaaattaaccatactattgaaaataaaagtaatgtccaacctatagattccctcaaccattgattagcaatgatccaacaaatcaccaag 754315  T
Q  187 actcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgta 286  Q
    | ||||| ||| |||||||||||||||| ||         |||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  754316 aatcaaatcagacataaaataaataaca-caatacaaaaactaaccatgtatatgttgcagttgaatccttgcttaaggtgatatcaaactctcaatgta 754414  T
Q  287 gacatttgag 296  Q
    ||||| ||||    
T  754415 gacatctgag 754424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 296
Target Start/End: Original strand, 9565436 - 9565644
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaag 186  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  9565436 atcaacaactcaaattaaccatactattgaaaataaaagcaatgtccaacctatagattccctcaaccattgattagcaatgatccaacaaatcaccaag 9565535  T
Q  187 actcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgta 286  Q
    | ||||| ||| |||||||||||||||| ||         ||||||||||  |||||| | ||||||||  || ||||||||||||||||||||||||||    
T  9565536 aatcaaatcagacataaaataaataaca-cagtaaaaaaactaaccatatcaatgttgcatttgaatccgtgcctaaggtgatatcaaactctcaatgta 9565634  T
Q  287 gacatttgag 296  Q
    ||||||||||    
T  9565635 gacatttgag 9565644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 2636167 - 2635953
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaa-gcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaa 185  Q
    ||||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  2636167 atcaacaacacaaattaaccaaactactgaaaataaaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatctaacaagtcaccaa 2636068  T
Q  186 gactcaaagcaggcata--aaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaat 283  Q
    || ||| |  |||||||  | |||||||||||           |||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||    
T  2636067 gaatcagattaggcataatacataaataacac--agacaaaaactaaccatatatatgttgcagatgaatcccaacttaaggtgatatcaaactcgcaat 2635970  T
Q  284 gtagacatttgagtata 300  Q
    ||||||||||| |||||    
T  2635969 gtagacatttgggtata 2635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 90 - 289
Target Start/End: Complemental strand, 2631804 - 2631600
Alignment:
Q  90 aacaactcaaactaaccaaactattgtaaataaaa-gcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaagac 188  Q
    ||||||||||| |||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||     
T  2631804 aacaactcaaattaaccaaactattgaaaataaaaagcaattttcaacctacagattccatcaaccattgattaacaatgatccaacaagtcactaagaa 2631705  T
Q  189 tcaaagcaggcataaaa-----taaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaat 283  Q
    ||||||||| |||||||     |||||||||  |         |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  2631704 tcaaagcagacataaaataaaataaataaca-taaacataaaactaaccatgtatatgttgcagttgaatcccagcttaaggtgatattaaactctcaat 2631606  T
Q  284 gtagac 289  Q
    ||||||    
T  2631605 gtagac 2631600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 767880 - 768005
Alignment:
Q  90 aacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaagact 189  Q
    ||||||||||| |||||||||||||| |||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  767880 aacaactcaaattaaccaaactattgaaaattaaaacaatgttgaacctatatattccatcaaccattgattaacaatgatccaacaaatcaccaagaat 767979  T
Q  190 caaagcaggcataaaataaataacac 215  Q
    ||||||||  ||||||||||||||||    
T  767980 caaagcagatataaaataaataacac 768005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 294
Target Start/End: Original strand, 7324037 - 7324244
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacc-tatagattccatcaaccatt-gattaacaatgatccaacaaatcacca 184  Q
    |||||||||||||| ||| ||||||  || |||||||||  || ||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  7324037 atcaacaactcaaattaatcaaactgatgaaaataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatccaacaagtcaaca 7324136  T
Q  185 agactcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatg 284  Q
    | | ||| ||||||| ||||| ||| ||||| |         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7324137 aaaatcagagcaggcgtaaaacaaacaacacaa--acaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtgatatcaaactctcaatg 7324234  T
Q  285 tagacatttg 294  Q
    ||||||||||    
T  7324235 tagacatttg 7324244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 9594213 - 9594340
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataa-aagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaa 185  Q
    |||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9594213 atcaacaactcaaattaaccaaactattgaaaataagaagcaatgttgaacctatagattccatcaaccattgattaacaatgatccaa-aattcaccaa 9594311  T
Q  186 gactcaaagcaggcataaaataaataaca 214  Q
    || ||||||||| |||||| |||| ||||    
T  9594312 gaatcaaagcagacataaattaaacaaca 9594340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 7442627 - 7442796
Alignment:
Q  128 atgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaagactcaaagcaggcataaaataaataacaccacnnnnnnnnc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| |   |   ||||||||||||||| |         |    
T  7442627 atgttcaacctatagattccatcaaccattgattaacaatgatccaacaagtcacaaaaaatcagatgtg---taaaataaataacacaaataaaaaaac 7442723  T
Q  228 taaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtata 300  Q
    |||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7442724 taaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagtata 7442796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 7318519 - 7318715
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaataaaa-gcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaa 185  Q
    |||||||||||||  |||||||||||||| |||||||| ||||||||||| |||||| | |||| ||||||||||||| ||||||| ||||| ||| |||    
T  7318519 atcaacaactcaat-taaccaaactattgaaaataaaaagcaatgttcaagctatagct-ccattaaccattgattaataatgatctaacaagtcatcaa 7318616  T
Q  186 gactcaaagcaggcata--aaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaat 283  Q
    || ||| ||||||||||  | |||||||||| ||         |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7318617 gaatcagagcaggcataacatataaataaca-caaacaaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtgatattaaactctcaat 7318715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 2644102 - 2644175
Alignment:
Q  227 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtata 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2644102 ctaaccatatatatgttgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtata 2644175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 2492491 - 2492333
Alignment:
Q  140 tagattccatcaaccatt-gattaacaatgatccaacaaatcaccaagactcaaagcaggcataaaataaataacac-cacnnnnnnnnctaaccatata 237  Q
    |||||||||| ||||||| |||||||||||||||||||| |||  || | ||| |||| || ||||||||||||||| |||        |||||||||||    
T  2492491 tagattccattaaccattagattaacaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacacaaaaa---ctaaccatata 2492395  T
Q  238 tatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtat 299  Q
    ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2492394 tatgccgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagtat 2492333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 297
Target Start/End: Original strand, 7333927 - 7334073
Alignment:
Q  149 tcaaccattgattaacaatgatccaacaaatcaccaagactcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagt 248  Q
    ||||||||||||||||||||||| ||||| |||  || | |||||||||| |||||||||||||||| |         ||||||||||||||||||  ||    
T  7333927 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa--ataaaaactaaccatatatatgttgccgt 7334024  T
Q  249 tgaatcccagcttaaggtgatatcaaactctcaatgtagacatttgagt 297  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||    
T  7334025 tgaatcccagcttagggcgatatcaaactctcaatgtagacatttgagt 7334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 2658787 - 2658954
Alignment:
Q  121 aaaagcaatgttcaacctatagattccatcaaccattgattaacaatgatccaacaaatcaccaagactcaaagcaggcata--aaataaataacaccac 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| | ||| ||||||||||  | ||||||||||| |     
T  2658787 aaaagcaatgttcaacctatagattccatcaaccattaattaacaatgatctaacaagtcaccaa-aatcagagcaggcataacatataaataacacaa- 2658884  T
Q  219 nnnnnnnnctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagac 289  Q
            |||||||||||||||||| |||||||||   |||||||||||||| | |||||||||||||||    
T  2658885 -acaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatgagactctcaatgtagac 2658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 7442560 - 7442626
Alignment:
Q  91 acaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaaccatt 157  Q
    |||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  7442560 acaactcaaattaaccaaactattgaaaataaaaactatgttcaacctatagattccatcaaccatt 7442626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 2502507 - 2502446
Alignment:
Q  227 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtaga 288  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  2502507 ctaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaatgtaga 2502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 9561731 - 9561797
Alignment:
Q  227 ctaaccatatatatgttggagttgaatcccagcttaaggtgatatcaaactctcaatgtagacattt 293  Q
    |||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||| ||||    
T  9561731 ctaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaatgtagaaattt 9561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 666829 - 666894
Alignment:
Q  150 caaccattgattaacaatgatccaacaaatcaccaagactcaaagcaggcataaaataaataacac 215  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| ||||    
T  666829 caaccattgattaacaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacac 666894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 2643970 - 2644025
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaat-aaaagcaatgttcaacctata 141  Q
    |||||||||||||| |||||||||||||| |||| |||||||||| |||| |||||    
T  2643970 atcaacaactcaaattaaccaaactattgaaaataaaaagcaatgatcaagctata 2644025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 13498658 - 13498563
Alignment:
Q  88 tcaacaactcaaactaaccaaactattgtaaataaaagcaatgttcaacctatagattccatcaa-ccattgattaacaatgatccaacaaatcac 182  Q
    |||||| || ||||||||||||| |||  |||||  | |||| |||||||| |||||||||| || ||||| |||||||||||| |||||| ||||    
T  13498658 tcaacagctaaaactaaccaaacaatttaaaatatcaacaattttcaacctgtagattccattaacccattaattaacaatgattcaacaagtcac 13498563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 7423865 - 7423923
Alignment:
Q  87 atcaacaactcaaactaaccaaactattgtaaat-aaaagcaatgttcaacctatagat 144  Q
    |||||||||||||| |||||||||||||| |||| |||| || |||| |||||||||||    
T  7423865 atcaacaactcaaattaaccaaactattgaaaataaaaaccactgttgaacctatagat 7423923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 1438410 - 1438366
Alignment:
Q  133 caacctatagattccatcaaccattgattaacaatgatccaacaa 177  Q
    ||||||| ||||||||||||||||| ||||||||| || ||||||    
T  1438410 caacctaaagattccatcaaccattaattaacaataattcaacaa 1438366  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 9586959 - 9586987
Alignment:
Q  261 taaggtgatatcaaactctcaatgtagac 289  Q
    |||||||||||||||||||||||||||||    
T  9586959 taaggtgatatcaaactctcaatgtagac 9586987  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 9608074 - 9608138
Alignment:
Q  227 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagaca 290  Q
    ||||| |||||||||| | | ||||||| || |||||||||||||||||||||||  ||||||||    
T  9608074 ctaacaatatatatgtagcacttgaatctcatgcttaaggtgatatcaaactctcgttgtagaca 9608138  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 34336 - 34231
Alignment:
Q  159 attaacaatgatccaacaaatcaccaagactcaaagcaggcataaaataaataacaccacnnnnnnnnctaaccatatatatgttggagttgaatcccag 258  Q
    ||||||||||||| ||||| ||||||| | ||| ||||||||||| ||||||||||| |         |||||||||||||||||| ||||||||||  |    
T  34336 attaacaatgatcaaacaagtcaccaaaa-tcagagcaggcataacataaataacacaa--acaaaaactaaccatatatatgttgcagttgaatccatg 34240  T
Q  259 cttaaggtg 267  Q
    |||||||||    
T  34239 cttaaggtg 34231  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 20301743 - 20301675
Alignment:
Q  227 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 294  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20301743 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20301675  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 20306156 - 20306088
Alignment:
Q  227 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 294  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20306156 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20306088  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 20310560 - 20310492
Alignment:
Q  227 ctaaccatatatatgttggagttgaatccca-gcttaaggtgatatcaaactctcaatgtagacatttg 294  Q
    |||||||||| ||||||| || ||| || || |||||||||||||| ||||||||||||||||| ||||    
T  20310560 ctaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagacttttg 20310492  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 20293264 - 20293228
Alignment:
Q  258 gcttaaggtgatatcaaactctcaatgtagacatttg 294  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  20293264 gcttaaggtgatattaaactctcaatgtagacttttg 20293228  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 89416 - 89384
Alignment:
Q  262 aaggtgatatcaaactctcaatgtagacatttg 294  Q
    |||||||||||||||||||||||||||| ||||    
T  89416 aaggtgatatcaaactctcaatgtagacttttg 89384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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