View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_105 (Length: 311)
Name: NF1126_high_105
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_105 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 42 - 302
Target Start/End: Complemental strand, 52189185 - 52188925
Alignment:
| Q |
42 |
taaaaataattattcccatcccactactacagccacaataccaatcaaatacatctctttgattggaattccatcttaatctctaataattaagtgcagc |
141 |
Q |
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| T |
52189185 |
taaaaataattattcccatcccactactacagccacaataccaatcaaatacatctctttgattggaattccatcttaatctctaataattaagggcagc |
52189086 |
T |
|
| Q |
142 |
aactctgttcctattgagctcccaaattcttcctgcatgtaggtaaacaaaattctaatttgttgatcaaacatgtcaataaatcattgcacggaacata |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52189085 |
aactctgttcctattgagctcccaaattcttcctgcatgtaggtaaacaaaattctaatttgttgatcaaacatgtcaataaatcattgcacggaacata |
52188986 |
T |
|
| Q |
242 |
aatctagggaccaatacatatttaatctcctcattctcaacttcaactacatcattcatat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52188985 |
aatctagggaccaatacatatttaatctcctcattctcaacttcaactacatcatccatat |
52188925 |
T |
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