View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_106 (Length: 308)
Name: NF1126_high_106
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_106 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 33 - 260
Target Start/End: Complemental strand, 2626823 - 2626596
Alignment:
| Q |
33 |
gaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcataca |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2626823 |
gaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcataca |
2626724 |
T |
|
| Q |
133 |
tctcaaaaaataccagacctaggatctcacacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcctgaaat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2626723 |
tctcaaaaaataccagacctaggatctcaaacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcatgaaac |
2626624 |
T |
|
| Q |
233 |
tagcataatcttcactgatgatgtccat |
260 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
2626623 |
tagcataatcttcactgatgaggtccat |
2626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 2638508 - 2638424
Alignment:
| Q |
33 |
gaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatg |
117 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||| |
|
|
| T |
2638508 |
gaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaaatg |
2638424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 49425025 - 49425055
Alignment:
| Q |
8 |
tatcataggtcaaccatttggcgatgaaacc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49425025 |
tatcataggtcaaccatttggcgatgaaacc |
49425055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University