View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_111 (Length: 305)
Name: NF1126_high_111
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_111 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 33 - 297
Target Start/End: Original strand, 14004496 - 14004760
Alignment:
| Q |
33 |
aagaatacacgagtgttgttatatgcaaattctgaacaagtctaaccaatggaagtaagaattttccaatggtaatatatttcgagcaaaagacaaattg |
132 |
Q |
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| T |
14004496 |
aagaatacactagtgttgttatatgcaaattctgaacaagtctaaccaatggaagtaagaatttttcaatagtaacatatttcgagcaaaagacataatg |
14004595 |
T |
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| Q |
133 |
atgaagccaaaacaaaaggaaggtgacatccaagacatcctttaatgacgaataattgttctgaatcaaatggttataacttgagaagtttagaatgtga |
232 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
14004596 |
atgaagccaaaataaaaggaaggtgacatccaagacatccttcaatgacgaataattgttctaaatcaaatggttataatttgagaagtttagaatgtga |
14004695 |
T |
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| Q |
233 |
tcattattgtttttgggttcaacaaaatgagttaaaatcttacctataggtttaagacctatgat |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004696 |
tcgttattgtttttgggttcaacaaaatgagttaaaatcttacctataggtttaagacctatgat |
14004760 |
T |
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