View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_114 (Length: 302)

Name: NF1126_high_114
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_114
NF1126_high_114
[»] chr5 (5 HSPs)
chr5 (33-302)||(41722878-41723147)
chr5 (35-302)||(41718154-41718421)
chr5 (269-302)||(34352226-34352259)
chr5 (269-302)||(34359934-34359967)
chr5 (269-302)||(29585607-29585640)
[»] chr4 (8 HSPs)
chr4 (201-302)||(48702127-48702228)
chr4 (201-302)||(48697438-48697539)
chr4 (201-299)||(30945803-30945901)
chr4 (201-291)||(30950517-30950607)
chr4 (270-302)||(24520331-24520363)
chr4 (271-302)||(42265883-42265914)
chr4 (271-302)||(42270602-42270633)
chr4 (85-178)||(48781266-48781360)
[»] chr2 (1 HSPs)
chr2 (201-302)||(5198961-5199062)
[»] chr3 (3 HSPs)
chr3 (201-302)||(2817557-2817658)
chr3 (269-302)||(5818819-5818852)
chr3 (270-302)||(5823581-5823613)
[»] chr6 (4 HSPs)
chr6 (201-299)||(27879036-27879134)
chr6 (269-302)||(26976437-26976470)
chr6 (270-302)||(1234680-1234712)
chr6 (271-302)||(27874296-27874327)
[»] chr8 (2 HSPs)
chr8 (270-302)||(9439678-9439710)
chr8 (270-302)||(9444398-9444430)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 41722878 - 41723147
Alignment:
Q  33 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41722878 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta 41722977  T
Q  133 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722978 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 41723077  T
Q  233 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723078 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 41723147  T

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Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 41718154 - 41718421
Alignment:
Q  35 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41718154 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc 41718253  T
Q  135 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718254 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 41718353  T
Q  235 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718354 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 41718421  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 34352226 - 34352259
Alignment:
Q  269 tcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||    
T  34352226 tcatcccaaatcagtaacaacacaagaacaagta 34352259  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 34359934 - 34359967
Alignment:
Q  269 tcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||    
T  34359934 tcatcccaaatcagtaacaacacaagaacaagta 34359967  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 29585640 - 29585607
Alignment:
Q  269 tcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||| ||||||||    
T  29585640 tcatcccaaatcagtaacaacacaacaacaagta 29585607  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 48702228 - 48702127
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 300  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702228 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 48702129  T
Q  301 ta 302  Q
    ||    
T  48702128 ta 48702127  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 48697539 - 48697438
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 300  Q
    ||||||| || |||||| ||||||||| || |  |  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  48697539 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag 48697440  T
Q  301 ta 302  Q
    ||    
T  48697439 ta 48697438  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 299  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  30945901 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 30945803  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac 291  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30950607 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac 30950517  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 24520363 - 24520331
Alignment:
Q  270 catcccaaatcagtaacaacacaagaacaagta 302  Q
    |||||||||||||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagta 24520331  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Original strand, 42265883 - 42265914
Alignment:
Q  271 atcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||    
T  42265883 atcccaaatcagtaacaacacaagaacaagta 42265914  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Original strand, 42270602 - 42270633
Alignment:
Q  271 atcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||    
T  42270602 atcccaaatcagtaacaacacaagaacaagta 42270633  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
Q  85 ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc 178  Q
    ||||||||||||||||| |  |||||||| |||||||  ||||| ||||| |||| | ||||| |||||  | ||| |||||||||||||||||||    
T  48781266 ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc 48781360  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 5199062 - 5198961
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 300  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199062 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 5198963  T
Q  301 ta 302  Q
    ||    
T  5198962 ta 5198961  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 2817658 - 2817557
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 300  Q
    ||||||| || |||||| ||||||||| || |  |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817658 ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 2817559  T
Q  301 ta 302  Q
    ||    
T  2817558 ta 2817557  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 5818852 - 5818819
Alignment:
Q  269 tcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||    
T  5818852 tcatcccaaatcagtaacaacacaagaacaagta 5818819  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 5823613 - 5823581
Alignment:
Q  270 catcccaaatcagtaacaacacaagaacaagta 302  Q
    |||||||||||||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagta 5823581  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
Q  201 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 299  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27879134 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 27879036  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 26976470 - 26976437
Alignment:
Q  269 tcatcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||||    
T  26976470 tcatcccaaatcagtaacaacacaagaacaagta 26976437  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 1234680 - 1234712
Alignment:
Q  270 catcccaaatcagtaacaacacaagaacaagta 302  Q
    |||||||||||||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagta 1234712  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Complemental strand, 27874327 - 27874296
Alignment:
Q  271 atcccaaatcagtaacaacacaagaacaagta 302  Q
    ||||||||||||||||||||||||||||||||    
T  27874327 atcccaaatcagtaacaacacaagaacaagta 27874296  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 9439710 - 9439678
Alignment:
Q  270 catcccaaatcagtaacaacacaagaacaagta 302  Q
    |||||||||||||||||||||||||||||||||    
T  9439710 catcccaaatcagtaacaacacaagaacaagta 9439678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 9444430 - 9444398
Alignment:
Q  270 catcccaaatcagtaacaacacaagaacaagta 302  Q
    |||||||||||||||||||||||||||||||||    
T  9444430 catcccaaatcagtaacaacacaagaacaagta 9444398  T

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