View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_115 (Length: 300)
Name: NF1126_high_115
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_115 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8823301 - 8823379
Alignment:
| Q |
1 |
aggttgtcactattgatgtacacgcagccaagaatctcatccagaccggtcacatttatcttgatgttaggtaaaccta |
79 |
Q |
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| T |
8823301 |
aggttgtcaccattgatgtacacgcagccaagaatctcatccagaccggtcacatttatcttgatgttaggtaaaccta |
8823379 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 8823425 - 8823500
Alignment:
| Q |
125 |
ataaacaaacaaaagaatcaacaaatcgagaaaataatctctttatcacaactttcccgtagataaagatttgata |
200 |
Q |
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| T |
8823425 |
ataaacaaacaaaagaatcaacaaatcgagaaaatgatctctttatcacaactttcccgtagataaagatttgata |
8823500 |
T |
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