View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_118 (Length: 291)
Name: NF1126_high_118
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_118 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 47385912 - 47385653
Alignment:
| Q |
30 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
129 |
Q |
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| T |
47385912 |
ttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtggg |
47385813 |
T |
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| Q |
130 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
229 |
Q |
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| T |
47385812 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
47385713 |
T |
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| Q |
230 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcctcca |
289 |
Q |
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| T |
47385712 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctcca |
47385653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 47372991 - 47373275
Alignment:
| Q |
1 |
tcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctat |
100 |
Q |
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| T |
47372991 |
tcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctat |
47373090 |
T |
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| Q |
101 |
cagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctct |
200 |
Q |
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| T |
47373091 |
cagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctct |
47373190 |
T |
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| Q |
201 |
catcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcc |
285 |
Q |
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| T |
47373191 |
tatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctcc |
47373275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
96 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
167 |
Q |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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