View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_12 (Length: 593)
Name: NF1126_high_12
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 5 - 581
Target Start/End: Complemental strand, 47386565 - 47385969
Alignment:
| Q |
5 |
tctccaacaaaatcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactc |
104 |
Q |
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| T |
47386565 |
tctccaacaaaatcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactc |
47386466 |
T |
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| Q |
105 |
gc----ttagtgtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataacta |
195 |
Q |
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| T |
47386465 |
accgagtgagtgtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataacta |
47386366 |
T |
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| Q |
196 |
ccgacaagactatagtttatgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatt |
286 |
Q |
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| T |
47386365 |
ccgacaagactatagtttatgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtatt |
47386266 |
T |
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| Q |
287 |
tt--attaatacatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctt |
384 |
Q |
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| T |
47386265 |
ttttattaatacatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctt |
47386166 |
T |
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| Q |
385 |
tgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttc |
484 |
Q |
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| T |
47386165 |
tgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctc |
47386066 |
T |
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| Q |
485 |
tagttccaccttctctgctttctcctctgtttcctcttcttcagcatatgctattaattcaccaaccatttcattgtcatataattcttcttcttta |
581 |
Q |
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| T |
47386065 |
tagttccaccttctctgctttctcctctgtttcctcttcttcaacatcttctattacttcaccaaccatttcattttcatataattcttcttcttta |
47385969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 220 - 411
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
220 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
318 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
319 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
411 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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