View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_137 (Length: 257)

Name: NF1126_high_137
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_137
NF1126_high_137
[»] chr3 (7 HSPs)
chr3 (178-254)||(27603169-27603245)
chr3 (178-240)||(3480338-3480400)
chr3 (178-240)||(15766410-15766472)
chr3 (178-240)||(17360719-17360781)
chr3 (178-240)||(20094041-20094103)
chr3 (178-240)||(17365361-17365423)
chr3 (178-233)||(43556173-43556228)
[»] scaffold0067 (1 HSPs)
scaffold0067 (182-254)||(32072-32144)
[»] scaffold0011 (1 HSPs)
scaffold0011 (178-254)||(3663-3739)
[»] chr8 (6 HSPs)
chr8 (178-254)||(19432071-19432147)
chr8 (178-254)||(19568221-19568297)
chr8 (178-240)||(21647473-21647535)
chr8 (178-240)||(32012340-32012402)
chr8 (178-235)||(4540087-4540144)
chr8 (178-235)||(6009597-6009654)
[»] chr6 (4 HSPs)
chr6 (178-254)||(10489767-10489843)
chr6 (178-254)||(19480174-19480250)
chr6 (178-240)||(22701637-22701699)
chr6 (182-254)||(17286169-17286241)
[»] chr2 (8 HSPs)
chr2 (178-257)||(13289095-13289174)
chr2 (178-240)||(42726839-42726901)
chr2 (178-240)||(44757991-44758053)
chr2 (182-254)||(27567963-27568035)
chr2 (179-233)||(3174668-3174722)
chr2 (203-254)||(27421273-27421324)
chr2 (178-250)||(28449598-28449668)
chr2 (178-237)||(32081387-32081447)
[»] chr7 (7 HSPs)
chr7 (178-256)||(15235252-15235330)
chr7 (178-240)||(33239817-33239879)
chr7 (178-240)||(47995614-47995676)
chr7 (192-256)||(14785127-14785191)
chr7 (178-240)||(17497614-17497676)
chr7 (178-240)||(17555538-17555600)
chr7 (178-254)||(21221476-21221552)
[»] chr5 (7 HSPs)
chr5 (178-256)||(17548803-17548881)
chr5 (178-237)||(13586111-13586170)
chr5 (178-257)||(24774749-24774828)
chr5 (178-240)||(17506716-17506778)
chr5 (178-240)||(41855233-41855295)
chr5 (178-240)||(42021626-42021688)
chr5 (178-254)||(25687265-25687341)
[»] scaffold0166 (1 HSPs)
scaffold0166 (178-240)||(17132-17194)
[»] scaffold0165 (1 HSPs)
scaffold0165 (178-240)||(13627-13689)
[»] scaffold0014 (1 HSPs)
scaffold0014 (178-240)||(28187-28249)
[»] chr4 (9 HSPs)
chr4 (178-240)||(8983676-8983738)
chr4 (178-240)||(13697152-13697214)
chr4 (178-240)||(21303224-21303286)
chr4 (178-240)||(36355955-36356017)
chr4 (178-240)||(54345017-54345079)
chr4 (178-240)||(13688086-13688148)
chr4 (178-240)||(40000883-40000945)
chr4 (178-240)||(54993236-54993298)
chr4 (178-254)||(16950277-16950351)
[»] chr1 (4 HSPs)
chr1 (178-240)||(27713085-27713147)
chr1 (178-240)||(5726759-5726821)
chr1 (178-240)||(37407807-37407869)
chr1 (178-225)||(17133531-17133578)
[»] scaffold0517 (1 HSPs)
scaffold0517 (178-240)||(205-267)
[»] scaffold0468 (1 HSPs)
scaffold0468 (180-257)||(1101-1177)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 27603169 - 27603245
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27603169 tcaatctcactacattgaaaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 27603245  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 3480338 - 3480400
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  3480338 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 3480400  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 15766410 - 15766472
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  15766410 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 15766472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17360781 - 17360719
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17360781 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17360719  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 20094041 - 20094103
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  20094041 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 20094103  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17365423 - 17365361
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||  | ||||||||| ||||    
T  17365423 tcaatctcactatgttgagaagatcttaaggaaatataattacttctattgtaaaccttcgag 17365361  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 43556228 - 43556173
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaac 233  Q
    ||||||||||||  |||||||||| ||| ||||||||||||| ||||| |||||||    
T  43556228 tcaatctcactatgttgagaagatattacggaaatataattactttgattgtaaac 43556173  T

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Target: scaffold0067 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 32072 - 32144
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||    
T  32072 tctcactacgttgagaagatcttaaggaaatataattattttgattgtaaacctgcaagcacaccttatgatc 32144  T

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Target: scaffold0011 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 3739 - 3663
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||    
T  3739 tcaatctcactacgttgagaagatcttaaggaaatataattatttttattgtaaacctgcgagcacaccttttgatc 3663  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19432147 - 19432071
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  19432147 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtagacctgcgagcacaccttatgatc 19432071  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19568297 - 19568221
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  19568297 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtagacctgcgagcacaccttatgatc 19568221  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 21647473 - 21647535
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  21647473 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 21647535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 32012402 - 32012340
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  32012402 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 32012340  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 4540087 - 4540144
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacct 235  Q
    |||||||| ||| |||||||||||||| ||||||||||| || |||||||| ||||||    
T  4540087 tcaatctcgctatattgagaagatcttgaggaaatataaatactttgactgcaaacct 4540144  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 6009597 - 6009654
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacct 235  Q
    |||| |||||||  ||||||||||||| |  |||||||||||||||||||| ||||||    
T  6009597 tcaacctcactatgttgagaagatcttcaaaaaatataattattttgactgcaaacct 6009654  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 10489843 - 10489767
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| || | |||||||||||    
T  10489843 tcaatctcactacgttgagaagatcttacggaaatataattattttgattgtaaacctgcaagcacaccttatgatc 10489767  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19480250 - 19480174
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| || | |||||||||||    
T  19480250 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtaaacctgcaagcacaccttatgatc 19480174  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 22701637 - 22701699
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  22701637 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 22701699  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 17286169 - 17286241
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||  |||| ||||| |||| |||||||||||||||||| ||||||||||| || | |||||||||||    
T  17286169 tctcactatgttgaaaagattttaaagaaatataattattttgattgtaaacctgcaagcacaccttatgatc 17286241  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 13289095 - 13289174
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||    
T  13289095 tcaatctcactatgctgagaagatcttaaggaaatataattattttgactgtaaacttgcaagcacaccttatgatctaa 13289174  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 42726839 - 42726901
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  42726839 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 42726901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 44757991 - 44758053
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  44757991 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 44758053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 27568035 - 27567963
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||| ||||||||||||||||||||||||| ||||| || ||||||| |||||| | |||||||||||    
T  27568035 tctcactacgttgagaagatcttaaggaaatataactatttcgattgtaaacatgcgagcacaccttatgatc 27567963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 3174668 - 3174722
Alignment:
Q  179 caatctcactacattgagaagatcttaaggaaatataattattttgactgtaaac 233  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  3174668 caatctcactatgttgagaagatcttaaggaaatgtaattattttgactggaaac 3174722  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 27421273 - 27421324
Alignment:
Q  203 ttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||||||||||||||  ||||| ||| || |||||||||||||    
T  27421273 ttaaggaaatataattattttgaccataaacatgcaagaaaaccttatgatc 27421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28449668 - 28449598
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttat 250  Q
    ||||| ||||||  |||||||||||  ||||||||||||||||||||| ||||||| ||| || | |||||||    
T  28449668 tcaatatcactatgttgagaagatc--aaggaaatataattattttgattgtaaacatgcaagcacaccttat 28449598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 32081447 - 32081387
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaa-tataattattttgactgtaaacctgc 237  Q
    ||||||||||||  |||||||||||| |  |||| |||||||||||||||| |||||||||    
T  32081447 tcaatctcactatgttgagaagatctcattgaaaatataattattttgactctaaacctgc 32081387  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 15235330 - 15235252
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| || | |||||||||||||    
T  15235330 tcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatcta 15235252  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 33239879 - 33239817
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  33239879 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 33239817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 47995676 - 47995614
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  47995676 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 47995614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 14785191 - 14785127
Alignment:
Q  192 ttgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  || | |||||||||||||    
T  14785191 ttgagaagatcttaaggaaatataattattttgactgtaaatctgtaaggacaccttatgatcta 14785127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17497676 - 17497614
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| ||||||||||||||||||||||||| || || || || |||||||||||    
T  17497676 tcaatctcactacgttgagaagatcttaaggaaatataactacttcgattgaaaacctgcgag 17497614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17555538 - 17555600
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| ||||||||||||||||||||||||| || || || || |||||||||||    
T  17555538 tcaatctcactacgttgagaagatcttaaggaaatataactacttcgattgaaaacctgcgag 17555600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 21221476 - 21221552
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||   ||||||||||| |||| |||||||||||||| |||| |||||| ||| || |  ||||||||||    
T  21221476 tcaatctcacagtattgagaagattttaaagaaatataattattctgaccgtaaacttgcaagcatgccttatgatc 21221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 17548803 - 17548881
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| || | |||||||||||||    
T  17548803 tcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatcta 17548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 13586111 - 13586170
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgc 237  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||    
T  13586111 tcaatctcactacgttgagaagatcttaaggaaatataaatatcttgattgtaaacctgc 13586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 24774749 - 24774828
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    ||||||||||||| || ||||||||||||||||||||||||| || || |||||||||||||| | ||||| ||| ||||    
T  24774749 tcaatctcactacgttaagaagatcttaaggaaatataattacttcgattgtaaacctgcgagcacaccttgtgacctaa 24774828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17506778 - 17506716
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17506778 tcaatctcactatgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17506716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 41855295 - 41855233
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  41855295 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 41855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 42021688 - 42021626
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  42021688 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 42021626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 25687265 - 25687341
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| ||| | ||||||||| | || | |||||||||||    
T  25687265 tcaatctcactatattgagaagattttaaggaaataaaattactttaattgtaaacctacaagcacaccttatgatc 25687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17132 - 17194
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17132 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13689 - 13627
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  13689 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 13627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 28249 - 28187
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  28249 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 28187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 8983676 - 8983738
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  8983676 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 8983738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13697214 - 13697152
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  13697214 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 13697152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 21303224 - 21303286
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  21303224 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 21303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 36356017 - 36355955
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  36356017 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 36355955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 54345079 - 54345017
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  54345079 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 54345017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13688148 - 13688086
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  13688148 tcaatctcactacgttgagaagatcttaaggaaatataattacttaaattgtaaacctgcgag 13688086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 40000945 - 40000883
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  40000945 tcaatctcactacgttgagaagatcttaaggaaatataattacttctattgtaaacctgcgag 40000883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 54993298 - 54993236
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| || || ||||||||||||||    
T  54993298 tcaatctcactatgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 54993236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 16950351 - 16950277
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||| |||| |||||||||||  ||||||||| ||||||||||||| ||||| ||| || | |||||||||||    
T  16950351 tcaatctctctacgttgagaagatc--aaggaaatacaattattttgactttaaacttgcaagcacaccttatgatc 16950277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 27713147 - 27713085
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  27713147 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 27713085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 5726821 - 5726759
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||| ||||    
T  5726821 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctacgag 5726759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 37407807 - 37407869
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  37407807 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 37407869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 17133531 - 17133578
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttga 225  Q
    ||||||||| ||  |||||||||||||||||||||||||||| |||||    
T  17133531 tcaatctcattatgttgagaagatcttaaggaaatataattactttga 17133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 267 - 205
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  267 tcaatctcactacgttgagaagatcttaaggaaatataattacttctattgtaaacctgcgag 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 1101 - 1177
Alignment:
Q  180 aatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    |||||||| || ||||||| |||||||| |||| ||||||||| |||| ||||| ||| || | ||||||||||||||    
T  1101 aatctcacaacgttgagaatatcttaagaaaatgtaattattt-gactttaaacttgcaagcacaccttatgatctaa 1177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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