View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_144 (Length: 252)

Name: NF1126_high_144
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_144
NF1126_high_144
[»] chr7 (2 HSPs)
chr7 (36-98)||(35347781-35347843)
chr7 (211-252)||(16263049-16263090)
[»] chr6 (1 HSPs)
chr6 (36-98)||(2274839-2274901)
[»] chr5 (1 HSPs)
chr5 (36-98)||(39346329-39346391)
[»] chr1 (2 HSPs)
chr1 (36-98)||(4012173-4012235)
chr1 (49-98)||(25875860-25875909)
[»] chr4 (1 HSPs)
chr4 (213-252)||(14015916-14015955)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 35347843 - 35347781
Alignment:
Q  36 ggaagaacaatataatagattcaccttgaaaagtcacctgcacatgaaaaagtagcatgcaga 98  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  35347843 ggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcaga 35347781  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 16263049 - 16263090
Alignment:
Q  211 tgtcatgttcagcaagcagcttcaattctcttgcaattgctt 252  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  16263049 tgtcatgttcagcaagcagcttcaattttcttgcaattgctt 16263090  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 2274901 - 2274839
Alignment:
Q  36 ggaagaacaatataatagattcaccttgaaaagtcacctgcacatgaaaaagtagcatgcaga 98  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  2274901 ggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcaga 2274839  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 39346391 - 39346329
Alignment:
Q  36 ggaagaacaatataatagattcaccttgaaaagtcacctgcacatgaaaaagtagcatgcaga 98  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  39346391 ggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcaga 39346329  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 4012235 - 4012173
Alignment:
Q  36 ggaagaacaatataatagattcaccttgaaaagtcacctgcacatgaaaaagtagcatgcaga 98  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  4012235 ggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcaga 4012173  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 25875909 - 25875860
Alignment:
Q  49 aatagattcaccttgaaaagtcacctgcacatgaaaaagtagcatgcaga 98  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  25875909 aatagattcaccttgaaaagtcacctgcacacgaaacagtagcatgcaga 25875860  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 14015955 - 14015916
Alignment:
Q  213 tcatgttcagcaagcagcttcaattctcttgcaattgctt 252  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  14015955 tcatgttcagcaagtagcttcaattctcttgcaattgctt 14015916  T

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