View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_150 (Length: 251)

Name: NF1126_high_150
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_150
NF1126_high_150
[»] chr4 (10 HSPs)
chr4 (54-223)||(34649522-34649687)
chr4 (54-101)||(624556-624603)
chr4 (54-90)||(28815698-28815734)
chr4 (54-101)||(4513387-4513434)
chr4 (54-101)||(8965170-8965217)
chr4 (54-101)||(9761191-9761238)
chr4 (65-94)||(31187498-31187527)
chr4 (54-87)||(31777894-31777927)
chr4 (54-107)||(39696285-39696338)
chr4 (64-101)||(47929321-47929358)
[»] chr3 (11 HSPs)
chr3 (55-101)||(4807993-4808039)
chr3 (57-101)||(29559624-29559668)
chr3 (54-101)||(4860237-4860284)
chr3 (54-101)||(4880245-4880292)
chr3 (54-101)||(34898714-34898761)
chr3 (54-101)||(45512942-45512989)
chr3 (54-92)||(13170063-13170101)
chr3 (64-101)||(10350587-10350624)
chr3 (54-91)||(40739158-40739195)
chr3 (57-101)||(36741247-36741291)
chr3 (65-101)||(48546249-48546285)
[»] chr7 (12 HSPs)
chr7 (54-101)||(11692466-11692513)
chr7 (54-102)||(12615826-12615874)
chr7 (54-101)||(28799967-28800015)
chr7 (54-101)||(18503427-18503474)
chr7 (54-101)||(44616678-44616725)
chr7 (55-101)||(1563687-1563733)
chr7 (54-107)||(7525514-7525567)
chr7 (64-101)||(20421716-20421753)
chr7 (57-101)||(3532654-3532698)
chr7 (54-102)||(4232550-4232598)
chr7 (54-90)||(28424278-28424314)
chr7 (54-90)||(43324648-43324684)
[»] chr2 (11 HSPs)
chr2 (54-101)||(38627402-38627449)
chr2 (54-94)||(18254672-18254712)
chr2 (54-101)||(18862328-18862375)
chr2 (54-101)||(43895989-43896036)
chr2 (55-101)||(34125821-34125867)
chr2 (54-84)||(40363019-40363049)
chr2 (55-101)||(43398385-43398431)
chr2 (54-99)||(8250248-8250293)
chr2 (63-100)||(34030225-34030262)
chr2 (54-90)||(13975213-13975249)
chr2 (55-107)||(40688587-40688639)
[»] chr1 (12 HSPs)
chr1 (54-101)||(4553493-4553540)
chr1 (54-100)||(1604171-1604217)
chr1 (54-100)||(33033203-33033249)
chr1 (54-101)||(25999926-25999973)
chr1 (54-101)||(32008960-32009007)
chr1 (54-101)||(37662504-37662551)
chr1 (54-92)||(5863057-5863095)
chr1 (64-101)||(12613253-12613290)
chr1 (54-107)||(40375262-40375315)
chr1 (54-94)||(11356837-11356877)
chr1 (65-101)||(27094287-27094323)
chr1 (64-100)||(27579431-27579467)
[»] chr5 (15 HSPs)
chr5 (54-100)||(34434247-34434293)
chr5 (64-101)||(8241126-8241163)
chr5 (65-101)||(33383649-33383685)
chr5 (54-101)||(885105-885152)
chr5 (54-101)||(7545345-7545392)
chr5 (55-101)||(25460728-25460775)
chr5 (54-93)||(42801145-42801184)
chr5 (54-100)||(4418289-4418335)
chr5 (55-101)||(14970355-14970401)
chr5 (54-92)||(37104155-37104193)
chr5 (63-101)||(38097349-38097387)
chr5 (64-101)||(6167288-6167325)
chr5 (66-99)||(38030894-38030927)
chr5 (54-94)||(20282841-20282881)
chr5 (54-90)||(22931564-22931600)
[»] chr8 (6 HSPs)
chr8 (54-107)||(1632387-1632440)
chr8 (54-101)||(11406626-11406673)
chr8 (65-99)||(32779205-32779239)
chr8 (54-91)||(36359052-36359089)
chr8 (54-94)||(17499037-17499077)
chr8 (54-90)||(34472384-34472420)
[»] scaffold1236 (1 HSPs)
scaffold1236 (54-94)||(67-107)
[»] scaffold0983 (1 HSPs)
scaffold0983 (54-94)||(3619-3659)
[»] scaffold0141 (1 HSPs)
scaffold0141 (54-98)||(39881-39925)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-98)||(74887-74931)
[»] scaffold0006 (1 HSPs)
scaffold0006 (54-94)||(59126-59166)
[»] scaffold0464 (1 HSPs)
scaffold0464 (54-101)||(5630-5677)
[»] chr6 (5 HSPs)
chr6 (54-101)||(6196296-6196343)
chr6 (54-101)||(22574946-22574993)
chr6 (55-100)||(31298634-31298679)
chr6 (54-90)||(389420-389456)
chr6 (64-92)||(7977141-7977169)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-101)||(315725-315771)
[»] scaffold0002 (1 HSPs)
scaffold0002 (54-92)||(136887-136925)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 34649687 - 34649522
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagttaattttgttgnnnnnnnnatccaaccaaataatgatttannnnnn 153  Q
    |||||||||||| |||||||||| | ||||||||||||||| |||||  | |||||||||| |||        || |||||||||||||||||           
T  34649687 gtcaagtaatctggtggttagagtttacacattttaaatgtggagaaataaagttaattttattgttttttt-attcaaccaaataatgattt---tttt 34649592  T
Q  154 nnaaataatcgcataaagtcaaggttatcataatgatttgtcaatttttgtttgacaaattataaatttt 223  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34649591 ttaaataatcgcataaagtcaaggttatcataatgatttgtcaatttttgtttgacaaattataaatttt 34649522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 624603 - 624556
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||    
T  624603 gtcaagtagtttagtggttagagctcacacattttaaatgtggagaag 624556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 28815734 - 28815698
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28815734 gtcaagtagtctagtggttagagctcacacattttaa 28815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 4513387 - 4513434
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||| || ||||||||| |||||||||||||||||||||| ||||||    
T  4513387 gtcaaatagtctagtggtcagagctcacacattttaaatgtggagaag 4513434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 8965217 - 8965170
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  8965217 gtcaagtagcctagtggttagagctcacacaatttaattgtagagaag 8965170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 9761238 - 9761191
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  9761238 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 9761191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 31187498 - 31187527
Alignment:
Q  65 tagtggttagagctcacacattttaaatgt 94  Q
    ||||||||||||||||||||||||||||||    
T  31187498 tagtggttagagctcacacattttaaatgt 31187527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 31777927 - 31777894
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattt 87  Q
    ||||||||||||||||| ||||||||||||||||    
T  31777927 gtcaagtaatctagtggctagagctcacacattt 31777894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 39696285 - 39696338
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagt 107  Q
    |||||||| |||||||| ||||||||||||| ||||| ||| |||||| |||||    
T  39696285 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtagagt 39696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 47929358 - 47929321
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  47929358 ctagtggctagagctcacacattttaaatgtggagaag 47929321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 4807993 - 4808039
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  4807993 tcaagtagtctagtggttagagctcacacattttaaatgtagagaag 4808039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 29559624 - 29559668
Alignment:
Q  57 aagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||    
T  29559624 aagtaatctagtggatagaactcacacattttaaatgtggagaag 29559668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 4860284 - 4860237
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  4860284 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 4860237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 4880292 - 4880245
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  4880292 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 4880245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 34898714 - 34898761
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  34898714 gtcaagtaatctagtggctagagctcacacaatttaattgtggagaag 34898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 45512942 - 45512989
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  45512942 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 45512989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 13170101 - 13170063
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaat 92  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  13170101 gtcaagtaatcaagtgattagagctcacacattttaaat 13170063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 10350624 - 10350587
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  10350624 ctagtggttagagctcatacattttaaatgtggagaag 10350587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 40739158 - 40739195
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaa 91  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  40739158 gtcaagtagtctagtggctagagctcacacattttaaa 40739195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 36741291 - 36741247
Alignment:
Q  57 aagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||    
T  36741291 aagtaatttagtggttaaaactcacacattttaaatgtggagaag 36741247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 48546285 - 48546249
Alignment:
Q  65 tagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  48546285 tagtggttagagctcacacaatttaattgtagagaag 48546249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 11692513 - 11692466
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  11692513 gtcaagtagtctagtggtcagagctcgcacattttaaatgtagagaag 11692466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 12615874 - 12615826
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagc 102  Q
    |||||||| |||||||||||||||||||||| ||||| ||| |||||||    
T  12615874 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagc 12615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 28799967 - 28800015
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacaca-ttttaaatgtagagaag 101  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  28799967 gtcaagtagtctagtggttggagctcacacatttttaaatgtagagaag 28800015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 18503427 - 18503474
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||  |||||||||| |||||||||||||||||||| ||||||    
T  18503427 gtcaagtagcctagtggttaaagctcacacattttaaatgtggagaag 18503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 44616725 - 44616678
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  44616725 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 44616678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 1563687 - 1563733
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  1563687 tcaagtagcctagtggttagagctcacacaatttaattgtagagaag 1563733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 7525567 - 7525514
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagt 107  Q
    ||||||||| ||||||| ||||||||||||| ||||| ||| |||||| |||||    
T  7525567 gtcaagtaacctagtggctagagctcacacaatttaattgtggagaagtagagt 7525514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 20421716 - 20421753
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  20421716 ctagtggttcgagctcacacattttaaatgtggagaag 20421753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 3532698 - 3532654
Alignment:
Q  57 aagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  3532698 aagtagtctagtggctagagctcacacaatttaattgtagagaag 3532654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 4232550 - 4232598
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagc 102  Q
    ||||| || |||||||||| ||||||| ||||||||||||| |||||||    
T  4232550 gtcaaatagtctagtggttggagctcatacattttaaatgtggagaagc 4232598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 28424278 - 28424314
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    |||||||| |||||||||||||||||||||| |||||    
T  28424278 gtcaagtagtctagtggttagagctcacacaatttaa 28424314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 43324684 - 43324648
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    |||||||| |||||||| |||||||||||||||||||    
T  43324684 gtcaagtagtctagtggctagagctcacacattttaa 43324648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 38627449 - 38627402
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||    
T  38627449 gtcaagtaatttagtggttagagatcacacattttaaatgtaaagaag 38627402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 18254712 - 18254672
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  18254712 gtcaagtaacctagtggttggagctcacacattttaaatgt 18254672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 18862375 - 18862328
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||  ||||||| ||||||||||||||||||||||| ||||||    
T  18862375 gtcaagtagcctagtggctagagctcacacattttaaatgtggagaag 18862328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 43896036 - 43895989
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  43896036 gtcaagtagtctagtggctagagctcacacaatttaattgtagagaag 43895989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 34125867 - 34125821
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||    
T  34125867 tcaagtagtctagtggctagggctcacacattttaaatgtggagaag 34125821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 40363019 - 40363049
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacaca 84  Q
    |||||||||||||||||||||||||||||||    
T  40363019 gtcaagtaatctagtggttagagctcacaca 40363049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 43398431 - 43398385
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  43398431 tcaagtagtctagtggttagagctcacacaatttaattgttgagaag 43398385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 8250248 - 8250293
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagaga 99  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  8250248 gtcaagtattctagtggttagagctcacacaatttaattgtggaga 8250293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 34030262 - 34030225
Alignment:
Q  63 tctagtggttagagctcacacattttaaatgtagagaa 100  Q
    ||||||||||||||||||||||||||||| || |||||    
T  34030262 tctagtggttagagctcacacattttaaacgtggagaa 34030225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 13975249 - 13975213
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  13975249 gtcaagtaatctagtggctagagctcacacaatttaa 13975213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 40688587 - 40688639
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagt 107  Q
    |||||||  ||||||||||||||||||||| ||||| ||| |||||| |||||    
T  40688587 tcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagt 40688639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 4553493 - 4553540
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  4553493 gtcaagtaatctagtggttagagctcacacaatttaattgtggagaag 4553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 1604171 - 1604217
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaa 100  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  1604171 gtcaactaacctagtggttagagctcacacattttaaatgtggagaa 1604217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 33033249 - 33033203
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaa 100  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||||    
T  33033249 gtcaagtagtctagtggttagagctcacacattttaattgtggagaa 33033203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 25999973 - 25999926
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  25999973 gtcaagtaatctagtggctagagctcacacaatttaattgtggagaag 25999926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 32009007 - 32008960
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||| ||||||||||||| || || ||||||||||    
T  32009007 gtcaagtaatctagtggctagagctcacacagttaaattgtagagaag 32008960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 37662504 - 37662551
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||| ||||||||||| ||||| ||||||||||    
T  37662504 gtcaagtagtctagtggttggagctcacacaatttaactgtagagaag 37662551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 5863095 - 5863057
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaat 92  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  5863095 gtcaagtagtctagtggttagaactcacacattttaaat 5863057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 12613290 - 12613253
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||| || ||||||||||||||||||||||||||||    
T  12613290 ctagtgattggagctcacacattttaaatgtagagaag 12613253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 40375262 - 40375315
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagt 107  Q
    ||||||||  ||||||||||||||||||||| ||||| ||| |||||| |||||    
T  40375262 gtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagt 40375315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 11356877 - 11356837
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    ||||||||  |||||||||||| ||||||||||||||||||    
T  11356877 gtcaagtagcctagtggttagaactcacacattttaaatgt 11356837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 27094287 - 27094323
Alignment:
Q  65 tagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||  |||||||||||||||||||||||||||    
T  27094287 tagtggttgaagctcacacattttaaatgtagagaag 27094323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 27579431 - 27579467
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaa 100  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  27579431 ctagtggctagagctcacacattttaaatgtggagaa 27579467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 34434247 - 34434293
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaa 100  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||    
T  34434247 gtcaagtagtttagtggttggagctcacacattttaaatgtagagaa 34434293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 8241163 - 8241126
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  8241163 ctagtggttagagctcacacattttaaatgtggagaag 8241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 33383685 - 33383649
Alignment:
Q  65 tagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||||||||||||||||||||||| ||||||    
T  33383685 tagtggttagagctcacacattttaaatgttgagaag 33383649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 885105 - 885152
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||| ||||||||||||||||||| | ||||||    
T  885105 gtcaagtagtctagtggttggagctcacacattttaaatatggagaag 885152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 7545345 - 7545392
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||  |||||||||| ||||||||||||||||||| ||||||    
T  7545345 gtcaagtaacatagtggttagcgctcacacattttaaatgtggagaag 7545392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 25460728 - 25460775
Alignment:
Q  55 tcaagtaatctagtggttagagctcacaca-ttttaaatgtagagaag 101  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  25460728 tcaagtagtctagtggttagagctcacacatttttaaatgtggagaag 25460775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 42801184 - 42801145
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatg 93  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  42801184 gtcaagtaatctagtgattagatctcacacattttaaatg 42801145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 4418289 - 4418335
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaa 100  Q
    |||| |||| ||||||||| ||||||||||||||||||||| |||||    
T  4418289 gtcaggtaacctagtggttggagctcacacattttaaatgtggagaa 4418335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14970401 - 14970355
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||| || ||||| ||||||||||||||||||||||    
T  14970401 tcaagtaacctagtgattggagcttacacattttaaatgtagagaag 14970355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 37104193 - 37104155
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaat 92  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  37104193 gtcaaataatctagtggttaaagctcacacattttaaat 37104155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 38097387 - 38097349
Alignment:
Q  63 tctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  38097387 tctagtggctagagctcacacattttaaatgtggagaag 38097349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 6167325 - 6167288
Alignment:
Q  64 ctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  6167325 ctagtggctagagctcacacattttaaatgtggagaag 6167288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 38030894 - 38030927
Alignment:
Q  66 agtggttagagctcacacattttaaatgtagaga 99  Q
    ||||||||||||||||||||||||||||| ||||    
T  38030894 agtggttagagctcacacattttaaatgtggaga 38030927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 20282841 - 20282881
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    |||||||| |||| | |||||||||||||||||||||||||    
T  20282841 gtcaagtagtctaattgttagagctcacacattttaaatgt 20282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 22931564 - 22931600
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    |||||||| |||||||||||||||||||||| |||||    
T  22931564 gtcaagtagtctagtggttagagctcacacaatttaa 22931600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 1632387 - 1632440
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaagcagagt 107  Q
    ||||||||| ||||||||||||||||||||| ||||| ||| |||||| |||||    
T  1632387 gtcaagtaacctagtggttagagctcacacaatttaattgtggagaagtagagt 1632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 11406626 - 11406673
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||| ||||||||| || ||||||||||||||||| ||||||    
T  11406626 gtcaagtaatttagtggttaaagttcacacattttaaatgtggagaag 11406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 32779205 - 32779239
Alignment:
Q  65 tagtggttagagctcacacattttaaatgtagaga 99  Q
    |||||||||||||||||||||||||||||| ||||    
T  32779205 tagtggttagagctcacacattttaaatgtggaga 32779239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 36359089 - 36359052
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaa 91  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  36359089 gtcaagtagtctagtggctagagctcacacattttaaa 36359052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 17499037 - 17499077
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    |||||||| |||||||| ||||||| |||||||||||||||    
T  17499037 gtcaagtagtctagtggctagagctgacacattttaaatgt 17499077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 34472420 - 34472384
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    |||||||| |||||||||||||||||||||| |||||    
T  34472420 gtcaagtagtctagtggttagagctcacacaatttaa 34472384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1236 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1236
Description:

Target: scaffold1236; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 67 - 107
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  67 gtcaagtaacctagtggttagaggtcacacattttaaatgt 107  T

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Target: scaffold0983 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 3619 - 3659
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  3619 gtcaagtaacctagtggttagaggtcacacattttaaatgt 3659  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 39925 - 39881
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagag 98  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||    
T  39925 gtcaagtagtctaatggttagaactcacacattttaaatgtagag 39881  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 74887 - 74931
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagag 98  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||    
T  74887 gtcaagtagtctaatggttagaactcacacattttaaatgtagag 74931  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 59126 - 59166
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgt 94  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  59126 gtcaagtagtctagtggttagagctcacaaattttaaatgt 59166  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 5630 - 5677
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||    
T  5630 gtcaagtagcctagtggttagagctcacacattttaaatacagagaag 5677  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 6196296 - 6196343
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||||| ||||||||| ||||||||||||||||| || ||||||    
T  6196296 gtcaagtaatttagtggttaaagctcacacattttaaacgtggagaag 6196343  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 22574993 - 22574946
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  22574993 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaag 22574946  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 31298634 - 31298679
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaa 100  Q
    |||| |||| || ||||||||||||||||||||||||| |||||||    
T  31298634 tcaaataatttaatggttagagctcacacattttaaatatagagaa 31298679  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 389456 - 389420
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaa 90  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  389456 gtcaagtaatctagtggttagagctcatacaatttaa 389420  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 7977169 - 7977141
Alignment:
Q  64 ctagtggttagagctcacacattttaaat 92  Q
    |||||||||||||||||||||||||||||    
T  7977169 ctagtggttagagctcacacattttaaat 7977141  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 315771 - 315725
Alignment:
Q  55 tcaagtaatctagtggttagagctcacacattttaaatgtagagaag 101  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  315771 tcaagtagtttagtggttagagttcacacattttaaatgtggagaag 315725  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 136887 - 136925
Alignment:
Q  54 gtcaagtaatctagtggttagagctcacacattttaaat 92  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  136887 gtcaagtaatcaagtgattagagctcacacattttaaat 136925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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