View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_152 (Length: 251)
Name: NF1126_high_152
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_152 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 48581935 - 48582076
Alignment:
| Q |
29 |
atggagtgtaggtgttgagaagttttgaccacaagggaaagttttgattcttacagtaccgtttaactttaacttttcgttctatttatttactcagtag |
128 |
Q |
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| T |
48581935 |
atggagtgtaggtggtgagaagttttgaccacaagggaaagttttgattcttacagtaccgtttaactttaacttttcgttctatttatttacttagtag |
48582034 |
T |
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| Q |
129 |
gaattttcatctaatcaagattttccgcatttacgcatttga |
170 |
Q |
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| T |
48582035 |
gaattttcatctaatcaagattttccgcattcacgcatttga |
48582076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 48552724 - 48552864
Alignment:
| Q |
29 |
atggagtgtaggtgttgagaagttttgaccacaagggaaagttttgattcttacagtaccgtttaactttaacttttcgttctatttatttactcagtag |
128 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | || |||||||||||| | |||| |
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| T |
48552724 |
atggagtgtaggtgttgagaagttttgaccagaagggaaggttttgattcttacattatcgttcaactttaacctctccctctatttatttatttggtag |
48552823 |
T |
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| Q |
129 |
gaattttcatctaatcaagattttccgcatttacgcatttg |
169 |
Q |
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| T |
48552824 |
gaattttcatctaactaagattttccgcgttcacgcatttg |
48552864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 48582099 - 48582183
Alignment:
| Q |
164 |
catttgattgtctaaaaatatgtaaatttaatttgtcttttttagtttaatatagggaaatgctaaccattgcctttggagcatt |
248 |
Q |
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| T |
48582099 |
catttgattgtttaaaaatatgtaaatttaatttttcttttttagtttaatatagggaaatgctaaccattgtttttggagcatt |
48582183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 46055748 - 46055782
Alignment:
| Q |
216 |
tagggaaatgctaaccattgcctttggagcattgg |
250 |
Q |
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| T |
46055748 |
tagggaaatgctaaccattgcccttggagcattgg |
46055782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 26060326 - 26060293
Alignment:
| Q |
217 |
agggaaatgctaaccattgcctttggagcattgg |
250 |
Q |
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| T |
26060326 |
agggaaatgctaaccattgcccttggagcattgg |
26060293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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