View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_161 (Length: 248)
Name: NF1126_high_161
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_161 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35529470 - 35529688
Alignment:
| Q |
1 |
atcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaactttagctccatctag |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35529470 |
atcagaaaagattaaagtcattaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagcaacttcagctccatctag |
35529569 |
T |
|
| Q |
101 |
taacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctgataacactagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35529570 |
taacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctgataacactagaac |
35529669 |
T |
|
| Q |
201 |
accgtgtgttaatgcatat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
35529670 |
accgtgtgttaatgcatat |
35529688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35536942 - 35537159
Alignment:
| Q |
1 |
atcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaactttagctccatctag |
100 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
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| T |
35536942 |
atcagaaaagatgaaagccgttaaaaaaggtaaagcaaaacc-atctttaaccgaagctacctttccgtgagaatagtaagaaacttcagctccatctgg |
35537040 |
T |
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| Q |
101 |
taacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctgataacactagaac |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| |||||| | |||||||| |
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| T |
35537041 |
taacacgtcttcttcaaataccaacttatgcaaccgtacatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctgatgaaactagaac |
35537140 |
T |
|
| Q |
201 |
accgtgtgttaatgcatat |
219 |
Q |
| |
|
|||||||||||||||||| |
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| T |
35537141 |
gccgtgtgttaatgcatat |
35537159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 35577207 - 35577416
Alignment:
| Q |
1 |
atcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaactttagctccatctag |
100 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||| | |||| |||||||||| ||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
35577207 |
atcagaaaagatgaaagtcataaaacaaggtaaaactgaacccatctttaaccaaagctacctttccatgagaatagtaagcaacttcagttccatcttc |
35577306 |
T |
|
| Q |
101 |
taacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctgataacactagaac |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | | |||||||| |
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| T |
35577307 |
taacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggttcaagaaaaagagcaaaatttaaattcctggtgaaactagaac |
35577406 |
T |
|
| Q |
201 |
accgtgtgtt |
210 |
Q |
| |
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| ||||||| |
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|
| T |
35577407 |
gctgtgtgtt |
35577416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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