View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_163 (Length: 244)
Name: NF1126_high_163
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_163 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 14548630 - 14548412
Alignment:
| Q |
6 |
caacaatataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtccc |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14548630 |
caacaaaataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtatttggatcaatctcaaagatgtccc |
14548531 |
T |
|
| Q |
106 |
ataaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagc |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14548530 |
ataaacgaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagc |
14548431 |
T |
|
| Q |
206 |
atttaaaccatgaagcttg |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14548430 |
atttaaaccatgaagcttg |
14548412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37526098 - 37525889
Alignment:
| Q |
15 |
aattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaa |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
37526098 |
aattatcttcataaaacatatgaggtgtatataccgctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgtcccataaacgaa |
37525999 |
T |
|
| Q |
115 |
caatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaacc |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37525998 |
caatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaacc |
37525899 |
T |
|
| Q |
215 |
atgaagcttg |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
37525898 |
atgaagcttg |
37525889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 37588267 - 37588050
Alignment:
| Q |
7 |
aacaatataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtccca |
106 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
37588267 |
aacaaaataattatcttcataaaacatatgaggtgtatataccgctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgttcca |
37588168 |
T |
|
| Q |
107 |
taaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagca |
206 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37588167 |
taaacgaacaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagca |
37588068 |
T |
|
| Q |
207 |
tttaaaccatgaagcttg |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37588067 |
tttaaaccatgaagcttg |
37588050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 37690543 - 37690326
Alignment:
| Q |
7 |
aacaatataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtccca |
106 |
Q |
| |
|
||||| ||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37690543 |
aacaaaataattatcttcaaaaaacatataaggtgtatataccgctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgtccca |
37690444 |
T |
|
| Q |
107 |
taaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagca |
206 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37690443 |
taaacgaacaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagca |
37690344 |
T |
|
| Q |
207 |
tttaaaccatgaagcttg |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37690343 |
tttaaaccatgaagcttg |
37690326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 37618790 - 37618624
Alignment:
| Q |
58 |
actctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccg |
157 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37618790 |
actccagaacagtgcagaatgtatttggatcaatcttaaagatgtcccataaacgaacaatatgacgatgaaccaaggtcttgtgaatattatactcccg |
37618691 |
T |
|
| Q |
158 |
aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37618690 |
aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttg |
37618624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 37794558 - 37794392
Alignment:
| Q |
58 |
actctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccg |
157 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37794558 |
actccagaacagtgcagaatgtatttggatcaatcttaaagatgtcccataaacgaacaatatgacgatgaaccaaggtcttgtgaatattatactcccg |
37794459 |
T |
|
| Q |
158 |
aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37794458 |
aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttg |
37794392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 37787863 - 37787645
Alignment:
| Q |
6 |
caacaatataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtccc |
105 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
37787863 |
caacaaaataagtatcttcataaaacagatgaggtgtatataccactacaatattctagaacagtgcagaatgtatccggatcaatttgaaagatgtccc |
37787764 |
T |
|
| Q |
106 |
ataaaagaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagc |
205 |
Q |
| |
|
||||| ||||||| || ||||||| ||||||||||||||||| | |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
37787763 |
ataaacgaacaatgtggcgatggaccaaggtcttgtgaatatgacactctcgaattgcatgcctcatgtaacttagcttcttctcttcagcccattgagc |
37787664 |
T |
|
| Q |
206 |
atttaaaccatgaagcttg |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37787663 |
atttaaaccatgaagcttg |
37787645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 37611133 - 37611060
Alignment:
| Q |
6 |
caacaatataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgt |
79 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
37611133 |
caacaaaataagtatcttcataaaacagatgaggtgtatataccactacaatattctagaacagtgcagaatgt |
37611060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University