View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_179 (Length: 205)
Name: NF1126_high_179
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_179 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6326240 - 6326125
Alignment:
| Q |
1 |
aattatcaatcactactcaaacattaacttactctgtttccccnnnnnnnnagtagaaccctgtttttccattcaag-nnnnnnnnnagtcaattgaagt |
99 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
6326240 |
aattttcaatcactactcaaacattaacttactctgtttccccttttttttagtagaaccctgtttttccattcaagatttttttttagtcaattgaagt |
6326141 |
T |
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| Q |
100 |
tcaatactagtataat |
115 |
Q |
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| T |
6326140 |
tcaatactagtataat |
6326125 |
T |
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Target: scaffold2079 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 771 - 810
Alignment:
| Q |
1 |
aattatcaatcactactcaaacattaacttactctgtttc |
40 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
771 |
aattttcaatcactactcaaacattaacttactctgtttc |
810 |
T |
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