View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_18 (Length: 524)
Name: NF1126_high_18
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_18 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 27776952 - 27777390
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||| |
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| T |
27776952 |
ccccaacaaaatggggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttctt |
27777051 |
T |
|
| Q |
101 |
atgctatttcacatgatgatgttcagccaattaaatttttaccatctttgaaattgaacaatgaatcaccttattacatcctttacagaaaaacattcat |
200 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
27777052 |
atgctatttcacatgatg---ttcaaccaattaaatttttaccatcttc-aaattgaacaatgaatcaccttattacatcctttacaaaaaaa-attcat |
27777146 |
T |
|
| Q |
201 |
gatatatctcatttcaaggtctttggatctttatgctttgcttctcatagaaagaaatttcaggctagagctaaaaagtgtgttttccttggccataaag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27777147 |
gatatatctcatttcaaggtctttggatctttatgctttgcttctcatagaaagaaatttcaggctagagctaaaaagtgtgttttccttggccataaag |
27777246 |
T |
|
| Q |
301 |
atgtaaaagggttcgttttatttgatcttattaagagagaattcttttttatctagacatgtgatatttttatgaaaacacatttccttttaatttactt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27777247 |
atgtaaaagggttcgttttatttgatcttattaagagagaattcttttttatctagacatgtgatatttttatgaaaacacatttccttttaatttactt |
27777346 |
T |
|
| Q |
401 |
ctttatttgcgtcctccaattcatctactcttacctttcctatg |
444 |
Q |
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|
| T |
27777347 |
ctttatttgcgtcctccaattcatctactcttacctttcctatg |
27777390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41218958 - 41218921
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaaca |
38 |
Q |
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| T |
41218958 |
ccccaacaaaatggggtggttgaaaggaagcatcaaca |
41218921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 51764252 - 51764299
Alignment:
| Q |
4 |
caacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg |
51 |
Q |
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| T |
51764252 |
caacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg |
51764299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18254037 - 18254086
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt |
50 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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|
| T |
18254037 |
ccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt |
18254086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 19481647 - 19481694
Alignment:
| Q |
4 |
caacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg |
51 |
Q |
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| T |
19481647 |
caacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg |
19481694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27195 - 27146
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt |
50 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
27195 |
ccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt |
27146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15193159 - 15193208
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt |
50 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
15193159 |
ccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt |
15193208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 53978177 - 53978226
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt |
50 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
53978177 |
ccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt |
53978226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49641122 - 49641073
Alignment:
| Q |
1 |
ccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt |
50 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
49641122 |
ccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt |
49641073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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