View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_180 (Length: 204)
Name: NF1126_high_180
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_180 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 795 - 706
Alignment:
| Q |
1 |
aatgtttgagtagtgattgataattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagcttctaattc |
90 |
Q |
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| T |
795 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattc |
706 |
T |
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Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 6326216 - 6326315
Alignment:
| Q |
1 |
aatgtttgagtagtgattgataattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgtagcttctaattcagcc |
94 |
Q |
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| T |
6326216 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagcttctaattcagcc |
6326315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6333717 - 6333774
Alignment:
| Q |
22 |
aattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgta |
79 |
Q |
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| T |
6333717 |
aattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgta |
6333774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6242582 - 6242487
Alignment:
| Q |
1 |
aatgtttgagtagtgattgataattgaagttatttaccttgttgaatctgatg------aagttgaagttgcatttggaattgtagcttctaattc |
90 |
Q |
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| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattc |
6242487 |
T |
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