View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_23 (Length: 510)
Name: NF1126_high_23
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 41704623 - 41704130
Alignment:
| Q |
15 |
aacctgtgtaaggtacaagagagaatccaaatggaaaaccagcttggttgtctcaatagtggttattgcnnnnnnnncattggctgtgattcttgtgatc |
114 |
Q |
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| T |
41704623 |
aacctgtgtaaggtacaagagagaatccaaatggaaaaccagcttggttgtttcaatagtggttattgcttttttttcattggctgtgattcttgtgatc |
41704524 |
T |
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| Q |
115 |
atcacaaagtccttcaaacactctaactacagggagaagcaggccaaggaaagagaaattgtgctgaaatcaagcactggaggggagaaaccttacaaaa |
214 |
Q |
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| T |
41704523 |
atcacaaagtccttcaaacactctaactacagggagaagcaggccaaggaaagagaaattgtgctgaaatcaagcactggaggggagaaaccttacaaaa |
41704424 |
T |
|
| Q |
215 |
tgtttcaactgaaagagttgaagaaagcaacaaactgtttttcacaagacaggatcctaggaagtggtggctttggggaagtttacaaaggtgaactaca |
314 |
Q |
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| T |
41704423 |
tgtttcaactgaaagagttgaagaaagcaacaaactgtttttcacaagacaggatcctaggaagtggtggctttggggaagtttacaaaggtgaactaca |
41704324 |
T |
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| Q |
315 |
agatggaactattgtagctgtcaagaaagctagagttggtaaccttaaaagcacacaacaagtgcttaatgaggtttcaatactttctcaagttaatcac |
414 |
Q |
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| T |
41704323 |
agatggaactattgtagctgtcaagaaagctagagttggtaaccttaaaagcacacaacaagtgcttaatgaggtttcaatactttctcaagttaatcac |
41704224 |
T |
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| Q |
415 |
aagaacctagtaagactcttaggttgctgtgtggaatctgagcagcctttgatgatctatgagtatatctcaaatgggaccctctatgaccata |
508 |
Q |
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| T |
41704223 |
aagaacctagtaagactcttaggttgctgtgtggaatctgagcagcctttgatgatctatgagtatatctcaaatgggaccctctatgaccata |
41704130 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 1440672 - 1440620
Alignment:
| Q |
140 |
actacagggagaagcaggccaaggaaagagaaattgtgctgaaatcaagcact |
192 |
Q |
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| T |
1440672 |
actaccgggagtagcagaccaaagaaagagaaattctgctgaaaccaagcact |
1440620 |
T |
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