View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_24 (Length: 509)

Name: NF1126_high_24
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_24
NF1126_high_24
[»] chr7 (8 HSPs)
chr7 (30-497)||(39457871-39458338)
chr7 (208-497)||(39437114-39437400)
chr7 (208-497)||(39463401-39463687)
chr7 (208-491)||(39424091-39424371)
chr7 (104-177)||(39423980-39424049)
chr7 (104-177)||(39437000-39437069)
chr7 (258-365)||(47369008-47369115)
chr7 (302-383)||(19981470-19981551)
[»] chr4 (1 HSPs)
chr4 (266-387)||(38490494-38490615)
[»] chr1 (1 HSPs)
chr1 (266-400)||(43098352-43098486)
[»] chr3 (5 HSPs)
chr3 (266-341)||(48445119-48445194)
chr3 (311-381)||(7176148-7176218)
chr3 (266-390)||(13465547-13465671)
chr3 (266-382)||(27816246-27816362)
chr3 (276-390)||(14350675-14350789)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 39458338 - 39457871
Alignment:
Q  30 atagatgcaatctataatctattatccttttgtgttttatttattccnnnnnnnnaaaagaacccttgtatgttttattaaacaaaatatactagatttt 129  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  39458338 atagatgcaatctataatctattatctttttgtgttttatttattccttttttttaaaagaacccttgtatgttttattaaacaaaatatactagatttt 39458239  T
Q  130 ggctcaaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458238 ggctcaaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaa 39458139  T
Q  230 aagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39458138 aagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttgaaatactttattttcttccaaccaaacttg 39458039  T
Q  330 ctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggaggcatcgaaacttccgatctctt 429  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39458038 ttgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctctcgactttgactccggaggcatcgaaacttccgatctctt 39457939  T
Q  430 tcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457938 tcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 39457871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 208 - 497
Target Start/End: Original strand, 39437114 - 39437400
Alignment:
Q  208 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 307  Q
    |||||||||| |||| | ||||||||||||| ||| |||||||||   |   ||||| || ||||||||| | |||||||||||||| | ||| |||||     
T  39437114 gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacctaccggattcaattctgtgtcacatactc 39437210  T
Q  308 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 407  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||   ||||||| ||||||||| | || ||||||||| |  | |    
T  39437211 tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaagagatggaaacgattgtggctatcagttctctccctcgactttgaccctagcg 39437310  T
Q  408 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 497  Q
    || || ||||||| |||||||||||  ||| |||  ||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||    
T  39437311 gcttcaaaacttctgatctctttctccatgtagtttactcaaccatgtaccgtcgagaaattacactaccaatccattcgtttcgcttca 39437400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 208 - 497
Target Start/End: Complemental strand, 39463687 - 39463401
Alignment:
Q  208 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 307  Q
    |||||||| | |||| | ||||||||||||| ||| |||||||||   |   ||||| || ||||||||||||||||| |||||||||   || |||||     
T  39463687 gatgtcgtattcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacttgccggactcaattctcagccacatactc 39463591  T
Q  308 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 407  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||   |||||||||| |||||  |||| |||||||||||| | |    
T  39463590 tattttcttccaaccaaacttgctgcaacgacaagcgttctctcaaagagatggaaacgattgtggctctccgttctttctctcgactttgactccagcg 39463491  T
Q  408 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 497  Q
    || || ||||||  || ||||||||   || |||| |||||||||||||| | ||||| || ||||||||||||||||| ||||||||||    
T  39463490 gcttcaaaacttttgacctctttctccgtgtagtgtactcaacgatgtactgtcgagaaattacactaccaatccattcgtttcgcttca 39463401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 208 - 491
Target Start/End: Original strand, 39424091 - 39424371
Alignment:
Q  208 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 307  Q
    |||||||||| |||| | ||||||||||||| ||| |||||||||   |   ||||| || || |||||| |||||||||||||||| | ||| |||||     
T  39424091 gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggataagcgacctgccggattcaattctgtgtcacatactc 39424187  T
Q  308 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 407  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||   ||||||| || ||||| ||| | |||||||||||| |      
T  39424188 tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaaaagatggaaactattgtggctttcggttctagctttcgactttgactccagcc 39424287  T
Q  408 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttc 491  Q
    || || ||||||| ||||||||||||  ||  ||| | |||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  39424288 gcttcaaaacttctgatctctttcttcgtgtggtgtattcaacgatataccggcgagatatcgcactaccaatccattcgtttc 39424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 39423980 - 39424049
Alignment:
Q  104 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatcgatataaataatagatgtat 177  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||    | ||||||||||||||||||    
T  39423980 ttattaaacaaaatatacgagattttagctgaaaatatattttaggttta----gctataaataatagatgtat 39424049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 39437000 - 39437069
Alignment:
Q  104 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatcgatataaataatagatgtat 177  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    |||||||||||| ||||    
T  39437000 ttattgaacaaaatttactagattttagctcaaaatatattttaggtttagat----ataaataatagacgtat 39437069  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 365
Target Start/End: Complemental strand, 47369115 - 47369008
Alignment:
Q  258 cggtagacagaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagag 357  Q
    ||||||| ||||| |||||| |||| ||||| || |||| ||| || || |  ||||  ||||||||| | |||| |||||||||||| |||||||||||    
T  47369115 cggtagatagaatcagcgacatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagag 47369016  T
Q  358 atggaaac 365  Q
    ||||||||    
T  47369015 atggaaac 47369008  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 19981551 - 19981470
Alignment:
Q  302 atactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttc 383  Q
    |||||||  ||||| ||||||||||| ||||  | | |||||||||||||||||||||||||||   | |||||||||||||    
T  19981551 atactttcatttctcccaaccaaactcgctgcgatcccaagcgtcctctcaaagagatggaaaccattatggctctcagttc 19981470  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 387
Target Start/End: Complemental strand, 38490615 - 38490494
Alignment:
Q  266 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 365  Q
    ||||||||||||||||| ||||| || |||| ||| || || | |||||| |||||||| |||||| | | ||||||| ||||||||||||||||||||     
T  38490615 agaattagcgacttgcctgattcgatactctgtcacattctctcttttctcccaaccaatcttgctttcatcacaagcttcctctcaaagagatggaaat 38490516  T
Q  366 atgtgtggctctcagttctcgc 387  Q
      |||||||||||||| |||||    
T  38490515 cggtgtggctctcagtcctcgc 38490494  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 43098352 - 43098486
Alignment:
Q  266 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 365  Q
    ||||||||| | ||||| ||||||||||| | ||| || || | |||  | |||||||||||||| | || |||||||||||||||||| |||||| |||    
T  43098352 agaattagctatttgccagattcaattctgtgtcacattctctctttcgtcccaaccaaacttgcggcaatcacaagcgtcctctcaaaaagatgggaac 43098451  T
Q  366 atgtgtggctctcagttctcgctcttgactttgac 400  Q
    | || |||||||||||||| |||||  ||||||||    
T  43098452 aggtatggctctcagttcttgctctctactttgac 43098486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 48445119 - 48445194
Alignment:
Q  266 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaa 341  Q
    |||||||||||| ||||||||||||| |||  ||| || || | |||||| |||||||||||||||||||||||||    
T  48445119 agaattagcgacatgccggattcaatactcagtcatattctctcttttctcccaaccaaacttgctgtaaccacaa 48445194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 7176218 - 7176148
Alignment:
Q  311 tttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagt 381  Q
    |||||||| || ||||| |||| |||||||||||||||||||||||||||||||   |||||| |||||||    
T  7176218 tttcttccgactaaactagctgcaaccacaagcgtcctctcaaagagatggaaatcggtgtggatctcagt 7176148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 390
Target Start/End: Complemental strand, 13465671 - 13465547
Alignment:
Q  266 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 365  Q
    ||||||||  ||||||||||||||||||| | ||| || || | |||| |  | |||||||  |||| ||  |||||||||||||||||| |||||| ||    
T  13465671 agaattagtaacttgccggattcaattctgtgtcacattctctcttttatctcgaccaaacaagctgcaattacaagcgtcctctcaaagcgatggagac 13465572  T
Q  366 atgtgtggctctcagttctcgctct 390  Q
       ||||||||||||||||||||||    
T  13465571 cattgtggctctcagttctcgctct 13465547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 27816362 - 27816246
Alignment:
Q  266 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 365  Q
    ||||||||||| || || |||||||| |||  ||| || || | |||  |||||||||||||  |||  ||||||||| |||||||||||||||||| |     
T  27816362 agaattagcgagttacctgattcaatactcagtcacatcctctctttaattccaaccaaactcactgcgaccacaagcatcctctcaaagagatggagat 27816263  T
Q  366 atgtgtggctctcagtt 382  Q
      |||||||||||||||    
T  27816262 cggtgtggctctcagtt 27816246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 390
Target Start/End: Complemental strand, 14350789 - 14350675
Alignment:
Q  276 acttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggct 375  Q
    ||||||||||||||||||| | ||| || || | |||| |  | |||||||  |||| ||  |||||||||||||||||| |||||| ||   ||||||     
T  14350789 acttgccggattcaattctgtgtcacattctctcttttatctcgaccaaacaagctgcaattacaagcgtcctctcaaagcgatggagaccattgtggcg 14350690  T
Q  376 ctcagttctcgctct 390  Q
    |||||||||||||||    
T  14350689 ctcagttctcgctct 14350675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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