View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_25 (Length: 508)
Name: NF1126_high_25
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 498
Target Start/End: Original strand, 36649695 - 36650169
Alignment:
| Q |
30 |
atgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgttagaaaatcttc |
129 |
Q |
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| T |
36649695 |
atgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgttagaaaatcttc |
36649794 |
T |
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| Q |
130 |
aagatcatatgcatatatgcttgta--------tggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgtatatgaacct |
221 |
Q |
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| T |
36649795 |
aagatcatatgcatatatgcttgtagtgcagtatggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgtatatgaacct |
36649894 |
T |
|
| Q |
222 |
cttgtatctttccttaagcttcaatcatatctaaagaacatacagtagaaatttttgaaattactgtttccatatcaaagaaattcatagtacagaaatt |
321 |
Q |
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| T |
36649895 |
attgtatctttccttaagcttcaatcatatctaaagaacatacagtagaaatttttgaaattactgtttccatatcaaagaaattcatagtacagaaatt |
36649994 |
T |
|
| Q |
322 |
tcaatttctaaacatacagaagatacattgttactgaatgaaattccaatatagttttctgttttgtagacatccctagaagaatttaatagcttgcaac |
421 |
Q |
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| T |
36649995 |
tcaatttgtaaacatacagaagatacattgttactgaatgaaattccaatatag--ttctgttttgtagacatccctagaagaatttaatagcttgcaac |
36650092 |
T |
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| Q |
422 |
acatgactattaattttgtgtgtgaaacacaaatcatacgcgccatcggccaaaactgtgagcttcaactcttcatc |
498 |
Q |
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| T |
36650093 |
acatgactattaattttgtgtgtgaaacacaaatcgtacgcgccatcggccaaaactgtgagcttcaactcttcatc |
36650169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 261
Target Start/End: Complemental strand, 36643932 - 36643692
Alignment:
| Q |
30 |
atgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgttagaaaatcttc |
129 |
Q |
| |
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|||||||| ||| ||||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
36643932 |
atgacaaggcttccaaatgaccttccactcttcgtcagttatggaggtgccgatgctctttctgatgttaaagatgtgcaacttctgttagaaagtctca |
36643833 |
T |
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| Q |
130 |
aagatcat-atgcatatatgcttgt--------atggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgtatatgaacc |
220 |
Q |
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|||||||| ||||| ||| |||||| | ||||||| |||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||| |
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| T |
36643832 |
aagatcatgatgcagataagcttgtcgtgcagtacagaaatgactatgctcatgcagattatgttatggctcaaagtgctaaacaagatgtatatgaacc |
36643733 |
T |
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| Q |
221 |
tcttgtatctttccttaagcttcaatcatatctaaagaaca |
261 |
Q |
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| T |
36643732 |
tcttatatctttctttaagcttcaatgatagttaaagaaca |
36643692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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