View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_29 (Length: 489)
Name: NF1126_high_29
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 8446516 - 8446166
Alignment:
| Q |
1 |
ctttctatgcattttataatatttttcactttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgatcta |
100 |
Q |
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| T |
8446516 |
ctttctatgcattttataatatttttcaatttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgattta |
8446417 |
T |
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| Q |
101 |
ggatgctaaattgttaagctttgattctaaattttgattatcttgaaaaatgtcacttggcctctagtgatctaggaagctaaattatggcacactagct |
200 |
Q |
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| T |
8446416 |
ggatgctaaattgttaagctttgattctaaattttgattatcttgaaaaatgtca-----cctccagtgatctaggaagctaaattatggcacactagct |
8446322 |
T |
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| Q |
201 |
attcctttggcataaaaactaatataatataatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacaggg- |
299 |
Q |
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| T |
8446321 |
attcctttggcataaaaactaatataatctaatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacaggga |
8446222 |
T |
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| Q |
300 |
----------tatgctctattgttctaatctttgtccctaactctttccctttgtaa |
346 |
Q |
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| T |
8446221 |
tcttcacctctattctctattgttctaatc-ttgtccctaactctttccctttgtaa |
8446166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 304 - 489
Target Start/End: Complemental strand, 8446141 - 8445955
Alignment:
| Q |
304 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtgga-ttgg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8446141 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatttgg |
8446042 |
T |
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| Q |
403 |
aatactctgtctcccaaaagcgacatcgcccctgcccatgccttattcaaacttgggaccatagcatacactagtggagttccaggg |
489 |
Q |
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| T |
8446041 |
aatactctgtctcccaaaagcgacatcacccctgcccatgctttattcaaacttgggaccatagcatacactagtggagttccaggg |
8445955 |
T |
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