View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_30 (Length: 488)
Name: NF1126_high_30
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 94 - 473
Target Start/End: Original strand, 41695930 - 41696309
Alignment:
| Q |
94 |
agagaggcccccttttgttgaaaggttgatgccaactagtcaagtagttaagggtaaggctcaatcaaacatttcagaaccaaaagagtaaagctaaaag |
193 |
Q |
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| T |
41695930 |
agagaggcccccttttgttgaaaggttgatgccaactagtcaagtagttaagggtaaggctcaatcaaacatttcagaaccaaaagagtaaagctaaaag |
41696029 |
T |
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| Q |
194 |
ccaaggaacatggaaaacaacctttatctttcagcaactactaggtccatgattaattaagcaagtaggtgttnnnnnnncatagacagagaggatggac |
293 |
Q |
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| T |
41696030 |
ccaaggaacatggaaaacaacctttatctttcagcaactactaggtccatgattaattaagcaagtaggtgttaaaaaaacatagacagagaggatggac |
41696129 |
T |
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| Q |
294 |
aaaatcatgaaacgcatggtttatggagtgtcagtgtgtcatcatgctctagccaccaacccgaccacattcccaacaagcaccatctagaaattagaat |
393 |
Q |
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| T |
41696130 |
aaaatcatgaaacgcatggtttatggagtgtcaatgtgtcatcatgctctagccaccaacccgaccacattcccaacaagcaccatctagaaattagaat |
41696229 |
T |
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| Q |
394 |
ccaaatgctagcttccaagttccattccaacattaaatgaaaatccaacttatatggtcatagaagttggtttttgttag |
473 |
Q |
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| T |
41696230 |
ccaaatgctagcttccaagttccattccaacattaaatgaaaatccaacttatatggtcatagaagttggtcttttttag |
41696309 |
T |
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