View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_33 (Length: 486)
Name: NF1126_high_33
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 37432708 - 37433186
Alignment:
| Q |
8 |
tagcataggagcaggtaaagtccatactttcttcttcaattcctcttggattctagcnnnnnnnnnnnnggaataagagatagaagtctaaactcacatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
37432708 |
tagcataggagcaggtaaagtccatactttcttcttcaattcctcttggattctagcaaaaagaaaaaaggaataagaga--gaagtctaaacttacatt |
37432805 |
T |
|
| Q |
108 |
ggtcggttatttttgtaaaagagactaatctctcgcaacattaataaattgtagttatttgctatcaaagacacttacatcgagcataattgagtttgag |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37432806 |
cgtcggttatttttataaaagagactaatctctcacaacattaacaaatcgtagttatttgctatcaaagacacttacatcgagcataattgagtttgag |
37432905 |
T |
|
| Q |
208 |
gagatatgtggtttcagggcagaccttgaactttgnnnnnnn-ggcaaatagaccgttgtatattttgcgttttgaactcccttagatatagttcaaaag |
306 |
Q |
| |
|
||| ||||||||||||| || | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37432906 |
gaggcatgtggtttcaggacacatcttgaactttgaaaaaaaaggcaaatagacctttgtatattttgcgttttgaactcccttagatatagttcaaaag |
37433005 |
T |
|
| Q |
307 |
atctaagaattcaaaagtttgaacccctaagttagggttctagttcctccactatgtggtttcgaatagatgattaaaataaatatattaag-aaaaatg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37433006 |
atctaagaattcaaaagtttgaacccctaaattagcgttctagttcctccactatgtggtttcgaatagatgattaaaataaatatattaagaaaaaatg |
37433105 |
T |
|
| Q |
406 |
atataaagtttctttcaaacttagccaagatctatgttagacctaatccgaattatgagtccatccagagttaaggatttc |
486 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37433106 |
atataaagtttctttcaaacttatccaagatctatgttagacctaatccgaattacgagtccatccagagttaaggatttc |
37433186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University